PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612531.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 454aa    MW: 49632.3 Da    PI: 7.9891
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17135184155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_013612531.1 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 184
                     78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8135184IPR001471AP2/ERF domain
CDDcd000182.01E-11135191No hitNo description
SuperFamilySSF541711.57E-15135193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-17136192IPR001471AP2/ERF domain
SMARTSM003801.1E-30136198IPR001471AP2/ERF domain
PROSITE profilePS5103217.332136192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLDLNLDVDS KEVSGAVLNQ MDESVTSNSS LVNAEASSCI DGEEELCSTP AVKFQFEILK  60
GGGREDEEGR SEVMTKEFFP IEKGASFGDS SGQSSRSSVD ISFQRGNQGR DAARVMQPPA  120
QPVKKSRRGP RSKSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV  180
KFRGLEADIN FVISDYEEDL KQMANLAKEE VVQVLRRQSS GFSRNNSRYQ GANLPKIGGW  240
GGAQMEQLNG NMAYDKAIAT KWNGREAASL IEPHAPRIIP AAANAKLDLN LGISLSLGDS  300
PKQNLNNVVC GRNSKMENHM AASTCDTPFN FLKRGSDHLI NRHVHPSAFF SPMERTPKEG  360
FMPRSPQSFP ARTWQPQDQP SGGTATTATA TPLLSNAASS GFSHSATHPP SSSTATLHPS  420
LPFLNLNMPG LYVIHPSEYA SHHHHDINRS QPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612531.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529460.0AK352946.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612531.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X1
RefseqXP_013714881.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X1
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A0D3ECZ50.0A0A0D3ECZ5_BRAOL; Uncharacterized protein
STRINGBo9g141100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2