PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013612311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 612aa MW: 67772.8 Da PI: 5.4707 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 441 | 486 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_013612311.1 441 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 486 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.5E-55 | 118 | 304 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 437 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-18 | 440 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-14 | 440 | 491 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-18 | 441 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 441 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 612 aa Download sequence Send to blast |
MKKVILSFLC SNLSFKLSVL FFTLLFQIFI FPVNTRKHVN SLSRQLKRSR FQMDDHRNRV 60 SLSPPDAHMS NYLLNQSTAT DDDSASAAME AFIGTNHWSQ QPSLPPPPSP SQFNEDTLQQ 120 RLQTLIESAG ERWTYAIFWQ ISHDFDSPAG ESTVILGWGD GYYRGEEDKE KKKKQSSSSN 180 PAEQEHRKRV IRELNSLITG GAGVSDEAND EEVTDTEWFF LVSMTQSFVN GVGLPGESFL 240 NSRVIWLSGS GALTGSGCER ARQGEVYGLQ TIVCIAAENG VVELGSSEVI SQSSDLMDKV 300 NGLFNGNGGG EASSWGFNLN PDQGENDPAL WLSEPNITGI EPVQETPAIE NAADLNFSSS 360 GLNQNGNFKQ GSSSNKKRSP VAKDEEMLSF STVVRSAAKS VDSDHSDIEA SVVKEAIIVE 420 PEKKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYSL RAVVPNVSKM DKASLLGDAI 480 SYINELKTKL QQAETDKEEV QKQLDGMSKE GGGSRRAKER KSNRDSASSV EMEIDVKIIG 540 WDVMIRVQCG KKNHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL 600 KAALMLKVGE DS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-115 | 79 | 300 | 8 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-115 | 79 | 300 | 8 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-115 | 79 | 300 | 8 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 422 | 430 | KKPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013612311.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612311.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | A0A0D3E6Y3 | 0.0 | A0A0D3E6Y3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g065530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |