PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611029.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 441aa    MW: 49734.6 Da    PI: 5.2349
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.7e-11392439247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l  +vk++G+  Wk I +  +     Rt+ ++k++w+++
   XP_013611029.1 392 KFWTPEEVEALRAGVKEYGKS-WKDIKNANPavfAERTEVDLKDKWRNL 439
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.316386441IPR017930Myb domain
SuperFamilySSF466892.39E-13388440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-13388441IPR009057Homeodomain-like
SMARTSM007174.3E-5390441IPR001005SANT/Myb domain
CDDcd116601.25E-16392441No hitNo description
PfamPF002493.4E-8394439IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEIIDKWVAE FLIRCQHNPR VSPTNLLSAL RFGDSGDCLK LKVSSVLLDL SDSLTRGSVD  60
EGTLDLLEIL EKLLLQQRSV ITESHKSAYC WTAAECTLRF MWPLDPLDGL FTDALERIWT  120
KRIGFLKENG SGLVSDELLK WETDLKKAVE DPEMYQRIRE SNIRYTAISF LNQLLKEQRG  180
LLGSSSLESV AQRRFRKRKA ENNVEGDGVR GNEVPNAVDE STRRLASDNT ERGTCEGDNE  240
NRNNRDVDGV GCPENDGIDK VNEQLAAEEE GTMGSQEQEH ESSLDKGDKM AARELKDYLL  300
EIQRQIDPST RQVQEPNNAF DHSVNVTPQP SKVNRTGTSG QDHIETPDNA SEKGSSSQGT  360
WSGRVRPRLS SPVPLNVSPL KKTNSPVRRP KKFWTPEEVE ALRAGVKEYG KSWKDIKNAN  420
PAVFAERTEV DLKDKWRNLV R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893550.0AC189355.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611029.10.0PREDICTED: uncharacterized protein LOC106317801
TrEMBLA0A0D3ECD00.0A0A0D3ECD0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EEW20.0A0A3P6EEW2_BRAOL; Uncharacterized protein
STRINGBo9g134990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein