PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610743.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 192aa    MW: 22512.2 Da    PI: 8.3345
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.21.8e-1382131352
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                     + +r+rr  +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l
  XP_013610743.1  82 DERRARRVVSNRESARRSRMRKKKQIEELQQQVEQLMVLNHNLSEKVINL 131
                     6689****************************************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1480144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.11682145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-1184140No hitNo description
PfamPF001705.5E-1284142IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1184136No hitNo description
CDDcd147026.73E-1585136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MIRHLKPNME SSPHRSHHCF DILEGMPPQN DNFNSTFLQN PNFHVHLQSI SPDLSTRSNN  60
NRSDHLDPNG EPFCHREGLD PDERRARRVV SNRESARRSR MRKKKQIEEL QQQVEQLMVL  120
NHNLSEKVIN LLESNHQIIQ ENSHLKEKVS SFHLLMAEML IPMRNVDGSI NERDVNHLRG  180
ETSNRTNTFF GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610743.11e-138PREDICTED: basic leucine zipper 43-like
RefseqXP_013654644.21e-138basic leucine zipper 43-like
TrEMBLA0A0D3E1N21e-136A0A0D3E1N2_BRAOL; Uncharacterized protein
STRINGBo9g014350.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.13e-69basic leucine-zipper 70