PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610671.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 325aa    MW: 37480.9 Da    PI: 5.9524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.31.2e-092013311128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                     de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l g kk
  XP_013610671.1  20 DELMLLRYLKPMIDDGASWPQHFAEDADVFNKNPSKEF-----NPENTVFVIVNPRTEACGKTDGC--DYGSWRIMARDKLIKNEeTGKLLGFKK 107
                     555678999999999996665779999*******8753.....33556666677777776655444..689***********99878889***** PP

             NAM 105 tLvfy..kgrapkgektdWvmheyrl 128
                     +L f   k ++ +  k +Wvm+eyrl
  XP_013610671.1 108 ILKFCvkKTKRAREYKRSWVMEEYRL 133
                     ****965445556679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.90310148IPR003441NAC domain
SuperFamilySSF1019418.76E-1920146IPR003441NAC domain
PfamPF023652.3E-621133IPR003441NAC domain
SuperFamilySSF1019411.22E-21171321IPR003441NAC domain
PROSITE profilePS5100516.68174323IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAAADDYLE IKDELMGAGD ELMLLRYLKP MIDDGASWPQ HFAEDADVFN KNPSKEFNPE  60
NTVFVIVNPR TEACGKTDGC DYGSWRIMAR DKLIKNEETG KLLGFKKILK FCVKKTKRAR  120
EYKRSWVMEE YRLLKPNQDH VICKIRLLFQ TEIGFLLSKH FSYSSGPLPA TQSLPAYGYG  180
LPNPEDEGAY YLRSLIGHEN EWPSYVTNDV FCMHPSALVD PHRDQMFAES GICIFANRTE  240
ASGYTDGCDR GCWRIMQGDK PIASIMEGET FGYRRVFKFC EEDKYRHFCN VNGDAVLLTW  300
IMEEYRLADE EMKDKVLCVV KLLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610671.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610671.10.0PREDICTED: uncharacterized protein LOC106317391
TrEMBLA0A0D3EBI90.0A0A0D3EBI9_BRAOL; Uncharacterized protein
STRINGBo9g122180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-115NAC domain containing protein 23