PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 32547.8 Da PI: 4.6539 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 172 | 206 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ L++l+ + +K + a++L +AveYIk Lq XP_013610521.1 172 LGDRVTALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 206 556666677777776.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.896 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-11 | 166 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-6 | 166 | 209 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-9 | 170 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MTGEFEMAGT WWSSPINTAT SVFSGYSLPR PTESSLDITD FGWQNFDNKT NDHNDDFMNM 60 HNSFFEGLFD PNEQLLADSW PKTTISAKSE LLESFPFLDN IFLIDSEAHD QIKDHKSLEQ 120 TTQDCMNLTS KRSERTEELK ENNDENSQRL LKRSRMDTLS PLPSFKVRKE KLGDRVTALQ 180 QLVSPFGKTD TASVLNEAVE YIKFLQEQVT VLSNPDQNTR GSVQQQQCSD KKSISSSQEE 240 EECSSRRHLD LASRGLCLMP ISASYPVAAA AASAAEMNXH LTSGILHSR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Differentiating root endodermis. {ECO:0000269|PubMed:16581911}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610521.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610521.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH114 | ||||
Swissprot | Q9M0X8 | 1e-142 | BH114_ARATH; Transcription factor bHLH114 | ||||
TrEMBL | A0A0D3E812 | 0.0 | A0A0D3E812_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g076250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14428 | 17 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05170.1 | 3e-92 | bHLH family protein |
Publications ? help Back to Top | |||
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