 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013610440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 340aa MW: 37921.9 Da PI: 7.1318 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013610440.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l d+++++G+g +W + + + g++R++k+c++rw++yl
XP_013610440.1 14 RGPWSPEEDAKLRDYIEKYGNGgNWISLPLKAGLRRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
| 2 | Myb_DNA-binding | 40.6 | 6.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++
XP_013610440.1 69 GDFSEEEDRIIFSLFAAIGSR-WSIIAAHLQ-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGRAPCCDKT KVKRGPWSPE EDAKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN 60
YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLQGR TDNDIKNYWN TKLRKKIMSS 120
SSSSSSSHSS AAMATPFLNP NSHDVKRPIT PSATIAPFSY NPYVENSTRS LISNINGFEA 180
DDQQIFPFFN PNYPHEFSLE DMSSSNNNNN ISGTSGFLLN HSMCDHYSNH NNFSSEVNGK 240
RSEIMMEQEE MMMIDHHIDQ MTEGYNGDFT QGYYNNDING HGDLKRMISG TGTNSNINMG 300
GSGSGSGSGT ASSSSFISNL AENKTSSSLL QHTCLPYFYS
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. Later, expressed transiently at the center of the boundary between the SAM and developing leaf primordia. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also present in shoot tips and flower buds. {ECO:0000269|PubMed:16461581}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}. |
| Publications
? help Back to Top |
- Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
Front Plant Sci, 2013. 4: p. 416
[PMID:24204368] - Guo D, et al.
The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
Plant Cell, 2015. 27(11): p. 3112-27
[PMID:26578700] - Yu YT, et al.
Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
Plant Mol. Biol., 2016. 90(3): p. 267-79
[PMID:26646286]
|
