PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 32668.8 Da PI: 5.4999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g W+t +++ g++R++k+c++rw +yl XP_013610139.1 14 KGAWTPEEDQKLIAYIQRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +TteEd+ +++++++ G++ W++Ia ++ gRt++++k++w++ XP_013610139.1 67 RGEFTTEEDDTIIKLHALKGNK-WAAIATYLA-GRTDNEIKNYWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.169 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.969 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.75E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MVRTPCCKEE GIKKGAWTPE EDQKLIAYIQ RHGEGGWRTL PEKAGLKRCG KSCRLRWANY 60 LRPDIKRGEF TTEEDDTIIK LHALKGNKWA AIATYLAGRT DNEIKNYWNT NLKKRLKQKG 120 IDPTTHKPIN STDQTGIGPK NLKRSSSGSA RVLNRVASKY AVDLNRDLVT GIIIGNSTII 180 TQNSEVENST TILLNKMSTS SGFSDNCSFS DGFPEFFSNQ EISDMSMSDD HVGLMEELKG 240 MLSYDNAVPG EIKGSPEANI ADEMEFLDSW NVEDDLDLEK FVSSLDSSIG VFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKRLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610139.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX946181 | 0.0 | JX946181.1 Eruca vesicaria subsp. sativa MYB34 protein (MYB34-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610139.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013610140.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 1e-146 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A0D3E1N5 | 0.0 | A0A0D3E1N5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g014380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-141 | myb domain protein 34 |