PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610106.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 496aa MW: 56955.4 Da PI: 5.7251

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_013610106.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl XP_013610106.1 100 L-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 .8899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	6	157	IPR003441	NAC domain
Pfam	PF02365	3.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EGKPRDQHQQ QHQPYANTSS 180 NISRSSSFDV GSDLEISSNT HQVLPYNNVT DTQPIFGNAF GDHDDRSQYL SQNMTPSFSN 240 YESPYGPYLN QSKVYTETEC GMLQHQMSLP PLQVENTPVQ TSIFSNGMNQ NSGQCGFDDF 300 AFAASNRNQL YNSNVDDHLI HIGNLEEQLH SAGHSTWMNM SNGSLNQSFA EDVEVLPSFE 360 ENDQDIEYFG RSGTSTLNNI EIDEFFSFED RVEDTDKSNI TLNSSGSRMI EEETRVDHKM 420 LICTRQTTQV LYHRVVPSQI LKVHINLVGG NEERRLFTEE EGKDSWFQKA ENVAKMKLNQ 480 IGLAAKHYYK CLTIIF

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EGKPRDQHQQ QHQPYANTSS  180
NISRSSSFDV GSDLEISSNT HQVLPYNNVT DTQPIFGNAF GDHDDRSQYL SQNMTPSFSN  240
YESPYGPYLN QSKVYTETEC GMLQHQMSLP PLQVENTPVQ TSIFSNGMNQ NSGQCGFDDF  300
AFAASNRNQL YNSNVDDHLI HIGNLEEQLH SAGHSTWMNM SNGSLNQSFA EDVEVLPSFE  360
ENDQDIEYFG RSGTSTLNNI EIDEFFSFED RVEDTDKSNI TLNSSGSRMI EEETRVDHKM  420
LICTRQTTQV LYHRVVPSQI LKVHINLVGG NEERRLFTEE EGKDSWFQKA ENVAKMKLNQ  480
IGLAAKHYYK CLTIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	2e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610106.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005238	6e-98	AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBank	CP002688	6e-98	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610106.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D3EEU3	0.0	A0A0D3EEU3_BRAOL; Uncharacterized protein
STRING	Bo9g161440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]