PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610008.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 579aa    MW: 63819.3 Da    PI: 6.0077
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15209268155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_013610008.1 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268
                     57*******************999975578446*************************98 PP
2AP251.13.2e-16311362155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_013610008.1 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-21209278No hitNo description
PfamPF008477.7E-12209268IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17209278IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-15210277IPR001471AP2/ERF domain
PROSITE profilePS5103219.164210276IPR001471AP2/ERF domain
SMARTSM003802.1E-29210282IPR001471AP2/ERF domain
PRINTSPR003676.8E-6211222IPR001471AP2/ERF domain
PfamPF008474.1E-11311362IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17311371IPR016177DNA-binding domain
CDDcd000187.12E-24311370No hitNo description
PROSITE profilePS5103218.65312370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17312370IPR001471AP2/ERF domain
SMARTSM003802.0E-32312376IPR001471AP2/ERF domain
PRINTSPR003676.8E-6352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNNNSLGFSL SPYEQNHHRK DVYSSTTTTA VDVAGEYCYD PTAASDESSA IQTSFPSPFG  60
VVVDAFTRDN NSHSRDWDIN GSACNNIHND EQDGPKLENF LGRTTTIYNT NENVGDGSGS  120
GCYGGGDGGG GSLGLSMIKT WLRNQPVDNV DNQENGNAAK GLSLSMNSST SCDNNNDSNN  180
NVVAQGKTID DSVEATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK  240
GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEVEEMKHM TRQEYVASLR  300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF  360
RGLTAVTNFD MNRYNVKAIL ESPSLPIGSA AKRLKEANRP VPSMMMISNN VSESENSASG  420
WQNAAVQHHQ GVDLSLLHQH QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM  480
TNIDHQSSVS DDSVTVCGNV VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ  540
QSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119131SGCYGGGDGGGGS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610008.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8L3U30.0BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
TrEMBLM4DBW80.0M4DBW8_BRARP; Uncharacterized protein
STRINGBra013978.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein