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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 579aa MW: 63819.3 Da PI: 6.0077 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.5e-15 | 209 | 268 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_013610008.1 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268 57*******************999975578446*************************98 PP | |||||||
2 | AP2 | 51.1 | 3.2e-16 | 311 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_013610008.1 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.55E-21 | 209 | 278 | No hit | No description |
Pfam | PF00847 | 7.7E-12 | 209 | 268 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-17 | 209 | 278 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 210 | 277 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 210 | 276 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-29 | 210 | 282 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 211 | 222 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 311 | 362 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 311 | 371 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.12E-24 | 311 | 370 | No hit | No description |
PROSITE profile | PS51032 | 18.65 | 312 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-17 | 312 | 370 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 312 | 376 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 352 | 372 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MNNNSLGFSL SPYEQNHHRK DVYSSTTTTA VDVAGEYCYD PTAASDESSA IQTSFPSPFG 60 VVVDAFTRDN NSHSRDWDIN GSACNNIHND EQDGPKLENF LGRTTTIYNT NENVGDGSGS 120 GCYGGGDGGG GSLGLSMIKT WLRNQPVDNV DNQENGNAAK GLSLSMNSST SCDNNNDSNN 180 NVVAQGKTID DSVEATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK 240 GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEVEEMKHM TRQEYVASLR 300 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF 360 RGLTAVTNFD MNRYNVKAIL ESPSLPIGSA AKRLKEANRP VPSMMMISNN VSESENSASG 420 WQNAAVQHHQ GVDLSLLHQH QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM 480 TNIDHQSSVS DDSVTVCGNV VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ 540 QSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 131 | SGCYGGGDGGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF317904 | 0.0 | AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610008.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8L3U3 | 0.0 | BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1 | ||||
TrEMBL | M4DBW8 | 0.0 | M4DBW8_BRARP; Uncharacterized protein | ||||
STRING | Bra013978.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8655 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 0.0 | AP2 family protein |