PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 501aa MW: 55153.9 Da PI: 7.2393 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.5 | 4.6e-35 | 48 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_013609773.1 48 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmh 140 799************.99*****99995443233444334666646**********.555666799******************87999999999 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_013609773.1 141 gsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 987666788************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 40 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.956 | 48 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 49 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MNKSNPAGAV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPQNWVGLPA GVKFDPTDQE 60 LIEHLEAKVL VKEMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDNSMH GSSSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGTHE EEREGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGEA 240 NSGGGGGEYK MRRGSGTTSG GSCSSSREIM NVNPTNRSDE VGGVGGGAMA VAAAAAAVVA 300 GLPSYAMDQL SFVPFMKSFD EVARRETLHT GQATCDDVMA EQLRHRHQAS PSSTSSHHVA 360 HHHHQHHHQQ QQRYHAFNIS QPTHPISTII SPSTSLHHAP VNTLDDNPYH VHRILLPNEN 420 YQAHQQQQDQ ERDEQHNDGK MGGRSASGLE ELIMGCSSSN THHDVKDGSS SMGNQQEAEW 480 LKYSTTFWPP PDSSDNQDHH G |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161574 | 0.0 | AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609760.1 | 0.0 | PREDICTED: uncharacterized protein LOC106316420 isoform X1 | ||||
Refseq | XP_013609773.1 | 0.0 | PREDICTED: uncharacterized protein LOC106316420 isoform X1 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0D3A3J1 | 0.0 | A0A0D3A3J1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F7M2 | 0.0 | A0A3P6F7M2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g016630.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 0.0 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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