PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013609510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36499.5 Da PI: 9.7375 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 83 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W+ Ia+++ gR++k+c++rw++ XP_013609510.1 83 RGHWRPTEDAKLKELVAQFGPQNWNVIAHHLL-GRSGKSCRLRWFNQ 128 899****************************9.***********996 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 136 | 178 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+ +l+ +++ +G++ W++I+r ++ gRt++ +k++w+ XP_013609510.1 136 RAFTEEEESRLLAVHQAYGNK-WALISRLFP-GRTDNAVKNHWHV 178 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.671 | 78 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-14 | 82 | 131 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.37E-28 | 83 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-15 | 83 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 84 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.31E-13 | 86 | 127 | No hit | No description |
PROSITE profile | PS51294 | 24.202 | 130 | 184 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 134 | 182 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 136 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-10 | 137 | 177 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-20 | 137 | 183 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MNPNLLKNNL TGNYTINDSG RFEVRNNFRS PPHSHPNFSL ARKHPHNKSV SVLESGDEHE 60 KERGGNGLKR RGKNGINSKL CSRGHWRPTE DAKLKELVAQ FGPQNWNVIA HHLLGRSGKS 120 CRLRWFNQLD PRIIKRAFTE EEESRLLAVH QAYGNKWALI SRLFPGRTDN AVKNHWHVIM 180 SRRTRESQRQ RQMQTPQAPS GNADIVSSSS SYNHGELFGT VANGAVVNGE DDDGDDEDAS 240 AVSTCTTELS LTPPSSTHQA RFLNYDSTLV PGKDGQCVQR AEVNGKYSKK MDHQNHHTIR 300 VSEERKVEMQ SGFYFFDFLG VGAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-31 | 83 | 184 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds. {ECO:0000269|PubMed:23911125}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers (at protein level) and siliques, and, to a lower extent, in roots, stems and leaves (PubMed:25343985). Expressed in embryos (e.g. heart and torpedo stages) and cotyledons, and, at low levels, in roots and inflorescence (PubMed:23911125). Accumulates specifically in root apical meristem quiescent center (QC) and vascular initial cells (PubMed:16581911, PubMed:24981610). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013609510.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609510.1 | 0.0 | PREDICTED: myb protein | ||||
Swissprot | Q6R053 | 1e-160 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | A0A0D3EEN1 | 0.0 | A0A0D3EEN1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g159830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9977 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-125 | myb domain protein 56 |
Publications ? help Back to Top | |||
---|---|---|---|
|