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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013609231.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 328aa MW: 37453.3 Da PI: 6.6802 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013609231.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179.3 | 1e-55 | 20 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeel+++yL++kv ++ +++ +i evd++kvePwd+p k+k eekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++
XP_013609231.1 20 LPPGFRFHPTDEELISYYLRPKVLNTFFSA-IAIGEVDLNKVEPWDIPWKAKIEEKEWYFFCLRDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 112
79*************************999.88***************888999****************************************. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
+++lvg+kktLvfykgrapkg+kt+Wvmheyrle
XP_013609231.1 113 EKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 146
999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009611 | Biological Process | response to wounding |
| GO:0042542 | Biological Process | response to hydrogen peroxide |
| GO:0051091 | Biological Process | positive regulation of sequence-specific DNA binding transcription factor activity |
| GO:1900057 | Biological Process | positive regulation of leaf senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MDSEVSRTGE ITKDSEQTDL PPGFRFHPTD EELISYYLRP KVLNTFFSAI AIGEVDLNKV 60
EPWDIPWKAK IEEKEWYFFC LRDRKYPTGL RTNRATKAGY WKATGKDKEI FKEKSLVGMK 120
KTLVFYKGRA PKGVKTNWVM HEYRLEGKYA IDNNHKTAKN EWVISRIFQK QADGKKMHIS 180
SLMKLGSGIN QFEPVGLPPL MDSSPYLKSG GGDTFAWSLS HVPCFSDQTT EDKSHLSESR 240
DECNFTMFGS SSTHLLIPNI GSILHSDPVF MQDNSSILKM LRDSEETPFK KDLQDFSTSE 300
NELTASSWHG HDISGSAAPV EMDCFWNF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
