PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609207.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 289aa    MW: 33325.1 Da    PI: 8.1494
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer80.81.7e-2560110457
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      rY eC+kN+Aas G++a+DGCgEf++++  e   +++ CaACgCHR+FHR+e+
  XP_013609207.1  60 PRYGECRKNQAASAGTTAYDGCGEFVSANPGE---DSFDCAACGCHRSFHRKES 110
                     69*************************96555...9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.2E-2261109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2061110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1562111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.91662109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-22148219IPR009057Homeodomain-like
SuperFamilySSF466892.19E-13150216IPR009057Homeodomain-like
PROSITE profilePS500718.681157221IPR001356Homeobox domain
TIGRFAMsTIGR015652.2E-28160216IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.607.9E-20220287IPR009057Homeodomain-like
SuperFamilySSF466892.02E-10223285IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26229286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDETKSKIEE QSRRRTKATP ICRETGDHVH SPPTRITKST RPPHAPPPNL ESIFRLSPEP  60
RYGECRKNQA ASAGTTAYDG CGEFVSANPG EDSFDCAACG CHRSFHRKES ISYGILEALK  120
ISPLQFRQIF CSPYGDGEAE EKKRIAMDRS SDEEEAGRAK RLKTRFTAEQ TEKMRSYAEK  180
VGWKVSSESR ERVKEFCDGI GVTRKNLRVW MNNHKEANGR EDEEEEGRVK RFKTKFTAEQ  240
TERMRSYAEK LRWKVGPEDR EETEGFCNEV GVNRNNFMTW INNHKEERD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-121602171875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609207.10.0PREDICTED: zinc-finger homeodomain protein 13
SwissprotQ9FMY73e-82ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A0D3E6340.0A0A0D3E634_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DTJ30.0A0A3P6DTJ3_BRAOL; Uncharacterized protein
STRINGBo9g058580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-84homeobox protein 27