PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608995.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 280aa    MW: 30290.6 Da    PI: 6.0642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11163209555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  XP_013608995.1 163 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 209
                     999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.76E-10156213No hitNo description
SuperFamilySSF474595.1E-17156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPPLVNDSS FSPANPSSYT LSEIWPFPVN DAVRSGLRLA VNSTPSDKDV STAAAAAAAA  60
EESTVTDLTA GWGGRKARAL NSEENESSKM VSLSSSGNEV KDSGERKRKL CGSESRNGDG  120
SMKPEGETSS GGGSKATEQK NKPEPPKDYI HVRARRGQAT DRHSLAERAR REKISEKMTA  180
LQDIIPGCNK IIGKALVLDE IINYIQSLQR QVEFLSMKLE VVNSGPSTGP TIGVFPTGDL  240
GTLPIDLHRN IYEQQEANEP RGSHPEWLHM QVDGSFNRTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608995.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV171e-163BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0D3E1V30.0A0A0D3E1V3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DB880.0A0A3P6DB88_BRAOL; Uncharacterized protein
STRINGBo9g015060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-163bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]