|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_013608989.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
bHLH |
Protein Properties |
Length: 542aa MW: 61500.2 Da PI: 5.6715 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013608989.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15.7 | 2.6e-05 | 369 | 402 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
N++f+ L+ ++P+ + ++K eiL +++Y+++L+
XP_013608989.1 369 NEKFSVLKAMVPTvN------QVDKEEILNNTIKYLQELE 402
9************66......7***************995 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MAGGVEAASG RNKRKNNLLR KQLAVALRSV QWSYAIFWSS SLTQPGVLEW EEGCYNGDIK 60 KRKKSYEAAH YKYALQRSNQ LRKLYLCMLE GDSNTTISTT HDVDDYGDDE EHNCNSATSM 120 MLSPDDLSDE EWYYIVSMSY VFSPSQCLPG RALVTGETIW LCNAQYADNK LFSRSLLARS 180 ASIQTVVCFP YLGGVIELGV TELISEDHSL LQHIKSCLLE TSKPDCASYN FSARQASDDE 240 KNQTKIKTSD GNSNSVLQEN HQIQSDEDVH YKRTVSTLVK YSADKDIHHL QPDLVSSNVG 300 SSFLRWKQRE QPNSILFQEH SNLQTLSQNV LRKILQEVPL MHSLDTKRTL PSKTLGLNQD 360 DPWDTRKENE KFSVLKAMVP TVNQVDKEEI LNNTIKYLQE LEERVEELES CMGSVNFVER 420 QRKSVNDSVL IEETSGNYDD STKIDGNSGE TEQVTIARDE THLRVKLKET EVVMEVRCSY 480 RDYIVADIME ALSKLHMDAF SVRSYTLNGF LTLNLKAKFR GAAVASVGMI KRELRRAIGE 540 II
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |