PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25731.2 Da PI: 6.7875 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 72 | 117 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + rE++RRd++N++f eL ++l + +++K +K++i A++ +++ XP_013608909.1 72 KVCREKQRRDKLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 117 5689*********************9...9**************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.786 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.15E-8 | 70 | 123 | No hit | No description |
SuperFamily | SSF47459 | 8.64E-13 | 70 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-9 | 72 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-7 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 73 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVFPENTNWL SDYPLIDGVF SHHSPIFPWQ IDGSATVTVE EVDGFLCDSD VIKERGSKKS 60 VKSESYAGPS SKVCREKQRR DKLNDKFTEL SSILEPGRAP KTDKVAIIND AIRMVNQARD 120 EAQRLKDLNS SLQEKIKELK DEKNELRDEK QKLKIEKDRI EQQLKAINTQ PLPAQPCFLP 180 NPPTLSQAQA PGSKLVPYTT YPGFAMWQFM PPAAVDTSQD HVLRPPVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353406 | 0.0 | AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608909.1 | 1e-169 | PREDICTED: transcription factor bHLH115 | ||||
Refseq | XP_013613874.1 | 1e-169 | PREDICTED: transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-142 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A0D3ACN3 | 1e-168 | A0A0D3ACN3_BRAOL; Uncharacterized protein | ||||
STRING | Bo00779s020.1 | 1e-169 | (Brassica oleracea) | ||||
STRING | Bo1g118840.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-145 | bHLH family protein |
Publications ? help Back to Top | |||
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