PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608699.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 637aa    MW: 71564.4 Da    PI: 7.2077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.8e-1282556291373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+ c ea+++++ +++++l+ar  elasp+g +pm+Rl++y+teALa r++r++++++++ pp+e +++   e   a +++++++Pi+kf 
  XP_013608699.1 255 LVNLLTGCLEAIRTRNIAAINHLIARTGELASPRGtTPMTRLISYYTEALALRVSRMWPHIFHIAPPREFERT--LEDDDAWRFLNQATPIPKFI 347
                     6899*******************************99*********************************964..44446999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h taN+++l+a+eg ervHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk el+etg+rL+ fAe++++pfef++ v++rled+
  XP_013608699.1 348 HYTANEMLLRAFEGRERVHIIDFDIKQGLQWPSFFQSLASRSNPPRHVRITGVGE----SKLELNETGDRLHGFAEAMNLPFEFHP-VVDRLEDV 437
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gEa+aVn+ +q+h++l ++++   + ++++ lv+s++P  vv++eqea+h+s+++ +r++++l+yysa+fd +++ l ++s  r+k
  XP_013608699.1 438 RLWMLHVKEGEAVAVNCLMQMHKTLYDDGTGGAAFRNFVGLVRSTNPVAVVIAEQEAEHDSAQLETRVCNSLKYYSAVFDVMHTHLRADSLMRVK 532
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.....sgslvlgWkdrpLvsvS 371
                     +E++l+grei+n+vaceg++r+ rh  +++Wr+++e+ GF+++ +se+++ q k+llr+++  ++g ++ve +      g ++l W ++pL+++S
  XP_013608699.1 533 IEEVLFGREIRNIVACEGSHRQGRHVGFGQWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGdgDEGfFNVERSaedgdGGGVTLRWLEQPLYTIS 627
                     ************************************************************97445599999545556466777************ PP

            GRAS 372 aW 373
                     aW
  XP_013608699.1 628 AW 629
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.649229602IPR005202Transcription factor GRAS
PfamPF035141.7E-125255629IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL  60
KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKKSLKRFAE ENKEDKSCLS RVKRQRGGDD  120
DHNRGFWFEH LTTQNSSQAL PFSLTCSGDD YEEKVWFAPS EVISQPLQSN NPNWANSVIT  180
TELAGLGDKD IDSSSRPAAV KEASGSSTSA SSDSRHRVPE PTNGSRNQYS HGGGNTEERT  240
INNNHMNDSQ RDFELVNLLT GCLEAIRTRN IAAINHLIAR TGELASPRGT TPMTRLISYY  300
TEALALRVSR MWPHIFHIAP PREFERTLED DDAWRFLNQA TPIPKFIHYT ANEMLLRAFE  360
GRERVHIIDF DIKQGLQWPS FFQSLASRSN PPRHVRITGV GESKLELNET GDRLHGFAEA  420
MNLPFEFHPV VDRLEDVRLW MLHVKEGEAV AVNCLMQMHK TLYDDGTGGA AFRNFVGLVR  480
STNPVAVVIA EQEAEHDSAQ LETRVCNSLK YYSAVFDVMH THLRADSLMR VKIEEVLFGR  540
EIRNIVACEG SHRQGRHVGF GQWRRMMEQL GFRSLGVSER EVLQSKMLLR MYGDGDEGFF  600
NVERSAEDGD GGGVTLRWLE QPLYTISAWG IGGSSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6326262926378Protein SCARECROW
5b3h_A1e-6326262925377Protein SCARECROW
5b3h_D1e-6326262925377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608699.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_013704123.10.0scarecrow-like protein 28
RefseqXP_013730810.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078IB140.0A0A078IB14_BRANA; BnaCnng14890D protein
TrEMBLA0A0D3E3T90.0A0A0D3E3T9_BRAOL; Uncharacterized protein
STRINGBo9g028850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein