PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 586aa MW: 64226.4 Da PI: 9.3897 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.4 | 1.1e-17 | 283 | 332 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013608495.1 283 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 332 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-23 | 280 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.225 | 281 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-19 | 282 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.57E-15 | 283 | 334 | No hit | No description |
Pfam | PF00010 | 3.7E-15 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-13 | 287 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPKPTPPPS SQGSHLKTHD FLQPLDCVGA 60 KEETSRVDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM 120 MFTAAAQAGG GNERNVVDEI SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS 180 IRADGAATMG QWPAVERRSQ SLTNTPLSGF SSRSSSQGSG LKSQSFMDML RSAKGTSQDD 240 DLDDEEDFVT KKESSSTSQI HRDLRVKAEA RGVGNDQKLN TPRSKHSATE QRRRSKINDR 300 FQMLRQLIPN SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNHEPA KLLNWQRNNQ 360 QLVPEGTVAF APKLEEEKNN IPVPVLGTTQ GVVIDRTETL NRATPATGAF PLSAQSNSFI 420 SPVIAGNPVN QLHTRVAASE TLEPSHSSRT HTQPLKEEGG DEEVHAGNIS ISSVYSQGLA 480 KTLREALENS GVDLTKASIS VEIELAKQSS SFKDHEPRGL VSTGNDEPKQ TRQPKRLSRS 540 IPHSHWTPIS SATTSHRTKV GGRTNLTCSR CYTSRNRGCP GSYILQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608495.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608495.1 | 0.0 | PREDICTED: transcription factor BIM1-like | ||||
Swissprot | Q9LEZ3 | 0.0 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A0D3EGY2 | 0.0 | A0A0D3EGY2_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g174770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6967 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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