![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013608492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25323.2 Da PI: 5.5841 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 129 | 170 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri +++ L++l+P +K++ a++L +A++Y+k L XP_013608492.1 129 AARQRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 170 569******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-14 | 127 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-12 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 130 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.74E-6 | 144 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MNNNNMNPSL DQNYTWNNII MNNKNDHHHN DPIDMAMNQH TQLHIFNPFT SSSSSFHFPP 60 LSSSLTTTTF FSGDQEEEED EEEPVEELSA MKEMMYKIAA MQPVDIDPAT VKKPKRHNVR 120 ISDDPQSVAA RQRRERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP 180 PPPQDQASQV VTTSWVSQPP PPDFGGGGGG DWYKSGENSI NSN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 130 | 135 | RQRRER |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. | |||||
Uniprot | TISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013608492.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB020752 | 1e-126 | AB020752.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH16. | |||
GenBank | AL353994 | 1e-126 | AL353994.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project). | |||
GenBank | CP002688 | 1e-126 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608492.1 | 1e-167 | PREDICTED: transcription factor HEC3-like | ||||
Swissprot | Q9LXD8 | 8e-84 | HEC3_ARATH; Transcription factor HEC3 | ||||
TrEMBL | A0A0D3EGP1 | 1e-165 | A0A0D3EGP1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DRR5 | 1e-165 | A0A3P6DRR5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g173860.1 | 1e-166 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09750.1 | 3e-68 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|