PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 28250.5 Da PI: 6.7654 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.8e-05 | 152 | 191 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013608418.1 152 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191 67788999*********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.947 | 141 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-11 | 147 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-4 | 150 | 195 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-7 | 151 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGDSREDQED RAMMETGVSS FSELLMLSGG VLSSSDHHLN DIGADGGEDS FGFVFSGSTG 60 SRMLCFSGDC QNDDESLFLQ PSLLSGVSVS DPSCTTNICK NSNDACADNK STKSSTKKRI 120 GSVNRQTMDH NRKPSKKCKQ NQEKSSVGTA KVRKERLGER IAALQQLVSP YGKTDAASVL 180 HEAMGYIKFL QDQIQVLCSP YLINYSLDGG VVTGDVRAGK KVRDLRSRGL CLVPVSSTVL 240 LESSNGADFW SPATMGHTTS SSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608418.1 | 0.0 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Swissprot | Q9LT67 | 1e-143 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A0D3ACB1 | 0.0 | A0A0D3ACB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g114650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-126 | bHLH family protein |
Publications ? help Back to Top | |||
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