PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608410.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 357aa    MW: 39856 Da    PI: 7.1942
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-0714462655
             AP2 26 g...krkrfslgkfgtaeeAakaaiaarkkleg 55
                    g   k ++++lg ++ +e+Aa+a++ a++k++g
  XP_013608410.1 14 GqtrKGRQVYLGGYDKEEKAARAYDLAALKYWG 46
                    335345*************************98 PP
2AP252.11.6e-1689140155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_013608410.1  89 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 140
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.971154IPR001471AP2/ERF domain
SMARTSM003805.7E-11960IPR001471AP2/ERF domain
PfamPF008472.7E-51246IPR001471AP2/ERF domain
CDDcd000184.33E-131456No hitNo description
Gene3DG3DSA:3.30.730.103.5E-111655IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-111656IPR016177DNA-binding domain
SuperFamilySSF541716.54E-1889149IPR016177DNA-binding domain
PfamPF008472.1E-1189140IPR001471AP2/ERF domain
CDDcd000181.92E-2489148No hitNo description
PROSITE profilePS5103218.6590148IPR001471AP2/ERF domain
SMARTSM003802.0E-3290154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1790148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MYIPVSELVK IKKGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGTTTT TNFPMSEYEK  60
EVEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  120
FGTQEEAAEA YDIAAIKFRG LTAVTNFDMN RYNVKAILES PSLPIGSAAK RLKEANRPVP  180
SMMMISNNVS ESENSASGWQ NAAVQHHQGV DLSLLHQHQE RYNGYYYNGG NLSSESARAC  240
FKQEDDQHHF LSNTQSLMTN IDHQSSVSDD SVTVCGNVVG YGGYQGFAAP VNCDAYAASE  300
FDYNARNHYY FAQQQQTQQS PGGDFPAAMT NNVGSNMYYH GEGGGEVAPT FTVWNDN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608410.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM4DBW80.0M4DBW8_BRARP; Uncharacterized protein
STRINGBra013978.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein