PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14566.9 Da PI: 7.7897 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81.3 | 1.5e-25 | 13 | 112 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C++C ++ C+++C +a yfp+e +++++++ klFG++n+++++k +++e+ + ++ss++ e+ a+++d ++G +gvi+kl ++++ ++a l++ XP_013607622.1 13 CCVCIEENKICTRKCEFAAYFPNEVQSDYEAATKLFGTTNIISMMKLASHEQNHLLASSILKEGAAWTDDNIRGGYGVIQKLMWEIKLHEAYLSE 107 **********************************************************************************************9 PP DUF260 97 lkeel 101 +k+++ XP_013607622.1 108 RKKKI 112 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.164 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-21 | 13 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEALRTDSKR GCCCVCIEEN KICTRKCEFA AYFPNEVQSD YEAATKLFGT TNIISMMKLA 60 SHEQNHLLAS SILKEGAAWT DDNIRGGYGV IQKLMWEIKL HEAYLSERKK KISEEKKQIV 120 LLLNQYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607622.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607622.1 | 9e-91 | PREDICTED: LOB domain-containing protein 5-like | ||||
Swissprot | Q9C8V8 | 2e-38 | LBD5_ARATH; LOB domain-containing protein 5 | ||||
TrEMBL | A0A078JEG2 | 9e-89 | A0A078JEG2_BRANA; BnaUnng01320D protein | ||||
STRING | Bo9g027690.1 | 2e-56 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36000.1 | 8e-41 | LOB domain-containing protein 5 |