PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 827aa MW: 94560.5 Da PI: 7.4699 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.7 | 4.6e-24 | 72 | 178 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwevt 79 fY+eY++ +GF++ +++s++sk+++e+++++f Cs++g+++e ++k + +r+ +t+Cka+++vk++++gkw+++ XP_013607599.1 72 FYQEYSRAIGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYENKscnrprarqskqdhpesNMAGGCRRTCAKTDCKASMHVKRRSNGKWVIH 166 9*************************************999998888***99988777665554455559************************* PP FAR1 80 kleleHnHelap 91 +++ eHnHel+p XP_013607599.1 167 SFVREHNHELVP 178 **********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-22 | 72 | 178 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-24 | 270 | 362 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.087 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.5E-7 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MDIDLRLHSG DQGAEEDRGL DNVLHNSDID IGKIEEDVMA ATTGELVDYA ETVNLEPLNG 60 MEFDSHGEAY AFYQEYSRAI GFNTAIQNSR RSKTTREFID AKFACSRYGT KREYENKSCN 120 RPRARQSKQD HPESNMAGGC RRTCAKTDCK ASMHVKRRSN GKWVIHSFVR EHNHELVPAQ 180 AVTEQARRIY AAMAKQFAEY KTVVGLKSDA KSLGRSLSVV ETGDFKALLE FLSRMQNFFY 240 AVDLGDDQRV KNVFWVDAKS RGSYVSFCDV VSLDTTYVRN KYKTPLAVFV GVNQHYQYMV 300 LGCALLSDES ADTFSWLMET WLKAMGGQAP KVLITEQEAV MNSVVPVIFP NTRHCVFLWH 360 VLVKVSENLS HVAKQHDDFM PKFEKCIYKS WKEEDFARRW WKILAKFGLK EDQWMQSLYE 420 DRRKWAPTYM TDVLLAGMST SQRGDSINAF FDKYLHKKTS VQEFVKLYDT ILQDRFEEEA 480 KADSETLNKQ PTMKSPSPFE KSVSEVYTPA VFKKFQVEVL GAIACSPREE NRDGTCSTFR 540 VQDFETSQEF VVTWNQAKAE ISCICRLFEY KGYLCRHTLN VLQCCHLSSV PSQYILKRWT 600 KDARSRQFSG EPPQQLQTRL QRYNELCQRA LKLSEEASCS QESYNVAFLA IEETLRNCAG 660 INRSLPDAAS SPTQGLVSVE EDNQQSRNGC KTSKKKNPTK KRKVSSEQEG VMPQVTAPES 720 LQQMDKLSPR TVGIESYYGT QQSVQTMVQL DLMGGPNRDN FYGNQQTIQG LRQLNSIAPS 780 YDSYYTAQQG IHGQGVDFFR PPNFSYDIRD DPNVRTTQLH EDAPRHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607599.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607599.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A0D3ABN1 | 0.0 | A0A0D3ABN1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g105420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |