PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19913.3 Da PI: 9.1499 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.9 | 2.2e-41 | 6 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +GfrF Ptdeel++++Lk+k+ gk+ +++ i+ev i+++eP +Lp+ ++k+++ wyf s+++ k+++++ ++r+t sg+Wk+tgkd++v+++ XP_013607450.1 6 VGFRFCPTDEELINYFLKNKILGKPWLVDDKIREVSICSYEPASLPAlsMIKSKDPVWYFLSPKEYKSPKKSLTKRTTPSGFWKSTGKDRKVKEE 100 7************************999999***************4448888889*************************************98 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++++++ t W+mhey++ XP_013607450.1 101 krrDGIVIGIKKTLVYHEGKSSNAVPTPWIMHEYHI 136 6656667***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.176 | 4 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.11E-43 | 5 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-25 | 6 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
METSNVGFRF CPTDEELINY FLKNKILGKP WLVDDKIREV SICSYEPASL PALSMIKSKD 60 PVWYFLSPKE YKSPKKSLTK RTTPSGFWKS TGKDRKVKEE KRRDGIVIGI KKTLVYHEGK 120 SSNAVPTPWI MHEYHITCLP LADQVTFCLQ GFSLFYLFLC MYHCFYLFDV T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-25 | 7 | 136 | 18 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607450.1 | 1e-125 | PREDICTED: NAC domain-containing protein 69-like | ||||
Swissprot | Q9M126 | 2e-59 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | A0A0D3DZV0 | 1e-102 | A0A0D3DZV0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D984 | 1e-102 | A0A3P6D984_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g004070.1 | 1e-103 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 6e-57 | NAC domain containing protein 69 |
Publications ? help Back to Top | |||
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