PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 600aa MW: 65974 Da PI: 7.7178 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.7 | 3.5e-16 | 321 | 359 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013607445.1 321 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 359 689**********************************96 PP | |||||||
2 | TCR | 52.3 | 1.1e-16 | 406 | 444 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013607445.1 406 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 444 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.4E-19 | 320 | 361 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.543 | 321 | 446 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.6E-12 | 323 | 358 | IPR005172 | CRC domain |
SMART | SM01114 | 4.2E-17 | 406 | 447 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.5E-12 | 408 | 444 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT 60 TPHVASHKGS RFRSHSNSSD PSNKVVEEAL LEKEPPQILN NECLTTTPRV TNDGACEYGE 120 TDLQKMCDDN VKRKSDTPDW ETLISDSSDM LIYGSPNDSE AFRCFLQRSS DSKTRLCDGG 180 SKPALVAPVS QSNEPESSDA LSILHRGVRR RCLDFEMPRN NNQTPRCVVP SIGLHLNAIA 240 MSSKDNNNVS KEYSFTGNVK VGLQSSTTPV LPSDDIGRDN EIREAAGVEE APLSLALVEV 300 NQSSPKKKRR KSEQAGEGES SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCIDCFNKPI 360 HEDTVLATRK QIESRNPLAF APKVIRNSDS TIEVGEDASK TPASARHKRG CNCKKSNCLK 420 KYCECYQSGV GCSINCRCEG CKNAFGRKDG SSFAGMDTEQ DQENETSGKS GTTIPLPPST 480 PMPLRQPLAQ LPISSNNMLP SQQSQQHLHG ASLYNSQSFR KQDMGLMSHS RIETIAEERA 540 EDIENFIHSP VTNINALSPN SKRVSLPHMD STETTHWRRN GGRKLLLSSI PTFPSLTPHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 325 | 443 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 325 | 443 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 305 | 309 | KKKRR |
2 | 305 | 310 | KKKRRK |
3 | 306 | 310 | KKRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00044 | PBM | Transfer from AT3G22760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607445.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF205142 | 1e-153 | AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds. | |||
GenBank | AY099653 | 1e-153 | AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. | |||
GenBank | AY128837 | 1e-153 | AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607445.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X2 | ||||
Refseq | XP_022559640.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X2 | ||||
Swissprot | Q8L548 | 0.0 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A0D3ABH9 | 0.0 | A0A0D3ABH9_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g104900.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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