PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607437.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 603aa MW: 66364.6 Da PI: 7.8014

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.5e-16	324	362	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013607437.1 324 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 362 689**********************************96 PP
2	TCR	52.3	1.1e-16	409	447	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013607437.1 409 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 447 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	323	364	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.543	324	449	IPR005172	CRC domain
Pfam	PF03638	5.6E-12	326	361	IPR005172	CRC domain
SMART	SM01114	4.2E-17	409	450	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.5E-12	411	447	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT 60 TPHVASHKGS RFRSHSNSSD PSNKVVEEAL LEKEPPQILN NECLTTTPRV TNDGACEYGE 120 TDLQKMCDDN VKRKSDTPDW ETLISDSSDM LIYGSPNDSE AFRCFLQRSS DSKTRLCDGG 180 SKPALVAPVS QSNEPESSDA LSILHRGVRR RCLDFEMPRN NNQTPRCVVP SIGLHLNAIA 240 MSSKDNNNVS KEYSFTGNVK VGLQSSTTPV LPSDDIGRDN EIREAAGVEE APLSLALVEV 300 NQSSPKKKRM CRRKSEQAGE GESSCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN 360 KPIHEDTVLA TRKQIESRNP LAFAPKVIRN SDSTIEVGED ASKTPASARH KRGCNCKKSN 420 CLKKYCECYQ SGVGCSINCR CEGCKNAFGR KDGSSFAGMD TEQDQENETS GKSGTTIPLP 480 PSTPMPLRQP LAQLPISSNN MLPSQQSQQH LHGASLYNSQ SFRKQDMGLM SHSRIETIAE 540 ERAEDIENFI HSPVTNINAL SPNSKRVSLP HMDSTETTHW RRNGGRKLLL SSIPTFPSLT 600 PHH

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT  60
TPHVASHKGS RFRSHSNSSD PSNKVVEEAL LEKEPPQILN NECLTTTPRV TNDGACEYGE  120
TDLQKMCDDN VKRKSDTPDW ETLISDSSDM LIYGSPNDSE AFRCFLQRSS DSKTRLCDGG  180
SKPALVAPVS QSNEPESSDA LSILHRGVRR RCLDFEMPRN NNQTPRCVVP SIGLHLNAIA  240
MSSKDNNNVS KEYSFTGNVK VGLQSSTTPV LPSDDIGRDN EIREAAGVEE APLSLALVEV  300
NQSSPKKKRM CRRKSEQAGE GESSCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN  360
KPIHEDTVLA TRKQIESRNP LAFAPKVIRN SDSTIEVGED ASKTPASARH KRGCNCKKSN  420
CLKKYCECYQ SGVGCSINCR CEGCKNAFGR KDGSSFAGMD TEQDQENETS GKSGTTIPLP  480
PSTPMPLRQP LAQLPISSNN MLPSQQSQQH LHGASLYNSQ SFRKQDMGLM SHSRIETIAE  540
ERAEDIENFI HSPVTNINAL SPNSKRVSLP HMDSTETTHW RRNGGRKLLL SSIPTFPSLT  600
PHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	328	446	14	120	Protein lin-54 homolog
5fd3_B	3e-17	328	446	14	120	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00044	PBM	Transfer from AT3G22760	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF205142	1e-144	AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds.
GenBank	AY099653	1e-144	AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBank	AY128837	1e-144	AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607437.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X1
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A0D3ABH9	0.0	A0A0D3ABH9_BRAOL; Uncharacterized protein
STRING	Bo1g104900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]