PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 502aa MW: 56031.2 Da PI: 9.3594 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 69 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av ++ g++Wk+Ia+ ++ Rt qc +rwqk+l XP_013607325.1 69 KGGWTPQEDETLRQAVDKYKGKRWKKIAEFFP-ERTQVQCLHRWQKVL 115 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.1e-19 | 121 | 167 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ++v++vk++G+ W++Ia+ ++ gR +kqc++rw+++l XP_013607325.1 121 KGTWTQEEDAIIVELVKKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 167 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 58.1 | 2e-18 | 173 | 216 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE+ l++a +++G++ W+ Ia+ ++ gRt++ +k++w++ XP_013607325.1 173 KDAWTTEEETALINAQQKHGNK-WAEIAKVLP-GRTDNAIKNHWNS 216 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.53 | 64 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-15 | 65 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-15 | 68 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 69 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 71 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-12 | 72 | 115 | No hit | No description |
PROSITE profile | PS51294 | 31.981 | 116 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-32 | 118 | 214 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-18 | 120 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 121 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-15 | 123 | 167 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-27 | 132 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.444 | 172 | 222 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-17 | 172 | 220 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 173 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 175 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.29E-13 | 175 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MKSSGSNPLA FSPAKERSEM KIEILCMENK QPTPASASEG SVNIFLYSPQ LKTPAPAHRR 60 TSGPMRRAKG GWTPQEDETL RQAVDKYKGK RWKKIAEFFP ERTQVQCLHR WQKVLNPELI 120 KGTWTQEEDA IIVELVKKYG PAKWSLIAKS LPGRIGKQCR ERWHNHLNPG IRKDAWTTEE 180 ETALINAQQK HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYFATCN LPPSATKLSS 240 ATKPLKDSDS VTQSSSVNID ANEDGVDHVD SSSDMLEESG VNEYACSPVS VECKPQLPNL 300 RPMSPRINSN AFVQKKEENG FGTPRHGNLY YKSPLDSYFA SEADLRRMYG YECGCSPSAV 360 SSSPVSLTIT PPCNKDSGLA AATRSPESFL REAARTFPNT PSIFRKRRKV VLAKKTDDVV 420 NSAVKEADQN ENSKDSAVIS PVGREALLLL ETVDDSNEVL SFNVSPPYRV IAKRRAVFKS 480 RQLEFTSAKE NQPETSEEDK SV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-66 | 68 | 222 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-66 | 68 | 222 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607325.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607325.1 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X2 | ||||
Swissprot | Q6R032 | 0.0 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A0D3EIC6 | 0.0 | A0A0D3EIC6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g184660.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 0.0 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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