PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 303aa MW: 32217.4 Da PI: 8.565 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 207.2 | 4.4e-64 | 103 | 256 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssa 94 sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + +a++s+ +++ + s+++++ +s++++ +s +ss+ XP_013607284.1 103 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTASTSSGTKKLRIVGSQQQQQAtshTSTSNTPPQSFDTSSS 197 7899************************************************9999988888877544444444431102223333333333332 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + + +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle XP_013607284.1 198 -RRDGGPREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 256 .333455566***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.8E-57 | 105 | 255 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-26 | 107 | 149 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.5E-30 | 206 | 254 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGMVGLRDVY LVAPGYHHQN AGVVSGSDQI NSNASLGVGM IPLLTAAPPH QQNVEDTDIN 60 FLGDSRRWQN NNSNQTQYLH FKSAHQTAVA SSSNNSGSGS AASGTATCQD CGNQAKKECK 120 QRRCRTCCKS RGFDCSTHVK STWVSAARRR ERQVMPTAST SSGTKKLRIV GSQQQQQATS 180 HTSTSNTPPQ SFDTSSSRRD GGPREAWPGQ VRAAAVFKCV RVTAVEDGDD EYAYQAVVKI 240 GGHVFKGFLY DQGLEPKEGF PNMSDLHLGG GADNNNGVSV ASQPNLDPPP NVYGGGGSGG 300 FYG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607284.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607283.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_013607284.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_013607285.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_013720784.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 1e-150 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A3P6DR43 | 0.0 | A0A3P6DR43_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g169460.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-141 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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