PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013607247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 588aa MW: 65562.8 Da PI: 6.6951 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 8e-14 | 279 | 338 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k+++ XP_013607247.1 279 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 338 57*******************666664478446**********99*************97 PP | |||||||
2 | AP2 | 49.6 | 9.7e-16 | 381 | 432 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_013607247.1 381 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 432 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 279 | 347 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.66E-20 | 279 | 348 | No hit | No description |
Pfam | PF00847 | 8.8E-11 | 279 | 338 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 280 | 346 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-14 | 280 | 346 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-24 | 280 | 352 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 281 | 292 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.03E-11 | 381 | 440 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-17 | 381 | 441 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-10 | 381 | 432 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 382 | 440 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 382 | 440 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-31 | 382 | 446 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 422 | 442 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 588 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDDQSQFVSY DASSAASSSP YLLDNFYGWT NQKPQELFFK 60 EEAQLAAAAS MADSTILTTF VDPQSHSQSH IPKLEDFLGG DVRYSDNSQS ETQDSSSLSQ 120 IYDPRHHQNQ NQNQNQNQNQ NQTGFYSDHN PDFNKTMAGF QTAFSTNSGS EVDDSASIAR 180 TLLAGEYLGH VVESSGPGLG FHGGASTGGA LSLGVNINNN ANQRSSSDNN QIVEHHYNVE 240 RINNNSEKRD SEKEKPVVAV ETSDCSNKKV ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN 300 SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWNAA ATTNFPITNY SKELEEMKHM 360 TKLEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA 420 EAYDIAAIKF RGINAVTNFE MNRYDVEAIM KSALPIGGAA KRLKLSLESA ASAEQKPNVG 480 HHQQQLHHLQ QQQQQLQLQS SHNNSSINFA LCPNSDVQSQ MIPCGIPFDA AALYHHQQQQ 540 QQQQNFFQHF HAASDSTASN NNNSNVQGSM GLMAPNAAEF FLWPNQSY |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013607247.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY585683 | 0.0 | AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607247.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A0D3EGF3 | 0.0 | A0A0D3EGF3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g171990.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|