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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013607245.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
C2H2 |
| Protein Properties |
Length: 235aa MW: 25224.2 Da PI: 9.338 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013607245.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00028 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k+Fs+ L H +H
XP_013607245.1 87 HKCSVCDKTFSSYQALGGHKASH 109
79**********99999998887 PP
|
| 2 | zf-C2H2 | 10.7 | 0.0017 | 143 | 162 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C++C+ksF + L H
XP_013607245.1 143 HVCSICNKSFATGQALGGHK 162
79********9988776665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0055062 | Biological Process | phosphate ion homeostasis |
| GO:2000280 | Biological Process | regulation of root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001047 | Molecular Function | core promoter binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MALEALSSPR LASPVPTLFQ DYAVGFHGSK GKRSKRSRSE FDRSLTEDEY IALCLMLLAR 60
DGNRTRDLPS CSSLPPLLPT PTSTHTHKCS VCDKTFSSYQ ALGGHKASHR KNSSQTQSSR 120
GDEKSTSSAI TIVRHGGGSV KPHVCSICNK SFATGQALGG HKRCHYEGKN GGGGSSSVSI 180
SEGVGSTSHV SSGSHHHHHH HRGFDLNIPP IPEFSTVNGE EEVMSPMPAK KLRLE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ858291 | 0.0 | DQ858291.1 Brassica carinata C2H2 zinc finger protein (ZF2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Shi H, et al.
The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
Plant Physiol., 2014. 165(3): p. 1367-1379
[PMID:24834923] - Shi H,Chan Z
The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
J. Pineal Res., 2014. 57(2): p. 185-91
[PMID:24962049] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239] - Li Y, et al.
The C2H2 zinc-finger protein SlZF3 regulates AsA synthesis and salt tolerance by interacting with CSN5B.
Plant Biotechnol. J., 2018. 16(6): p. 1201-1213
[PMID:29193661] - Kim SY,Hyoung S,So WM,Shin JS
The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
Plant Mol. Biol., 2018. 96(3): p. 315-326
[PMID:29335898] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541] - Shi H,Liu G,Wei Y,Chan Z
The zinc-finger transcription factor ZAT6 is essential for hydrogen peroxide induction of anthocyanin synthesis in Arabidopsis.
Plant Mol. Biol., 2018. 97(1-2): p. 165-176
[PMID:29675814]
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