PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607209.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 826aa    MW: 91956.4 Da    PI: 5.1504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21113168156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  XP_013607209.1 113 KKRYHRHTDRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 168
                     688899***********************************************998 PP
2START141.11.1e-443265523206
                     HHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
           START   3 aeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetl 76 
                     a ++ qel k+ + eep+Wv             +n++e+++                    +++ea++a +vv+m++ +lv  +l+   +W+e++
  XP_013607209.1 326 AVSCVQELTKMCDTEEPLWVNKKsdkiggetLCLNEEEYMR------LfpwpmeknnnngdFRTEASKANAVVIMNSITLVDAFLNAD-KWSEMF 413
                     67899***************999555554443344555555......1555556778999****************************.****** PP

                     S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
           START  77 a....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+t++ issg     g l lm+aelq+lsplvp R+ +f+Ry +q ++ g w+ivd  +ds  ++++ +++    + pSg++i++++ng
  XP_013607209.1 414 CsivaRAKTVQIISSGvsgasGSLMLMYAELQVLSPLVPtREAYFLRYVEQnSENGNWAIVDFPIDSFHDQNSPHEYK---RKPSGCIIQDMPNG 505
                     99999*************************************************************999998445555...5************* PP

                     EEEEEEEE-EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 161 hskvtwvehvdl.kgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +skv wvehv++  +r++h+ +   vksg+a+ga++wv  l+rqce+
  XP_013607209.1 506 YSKVKWVEHVEVvVERHVHETFAEYVKSGMAFGASRWVDVLERQCER 552
                     ***********7369******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-20104171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-22107176IPR009057Homeodomain-like
PROSITE profilePS5007117.799110170IPR001356Homeobox domain
SMARTSM003892.1E-19111174IPR001356Homeobox domain
CDDcd000866.17E-20113171No hitNo description
PfamPF000461.7E-18113168IPR001356Homeobox domain
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PROSITE profilePS5084840.947315555IPR002913START domain
SuperFamilySSF559611.03E-27316554No hitNo description
CDDcd088755.87E-89319551No hitNo description
SMARTSM002344.3E-23324552IPR002913START domain
PfamPF018524.0E-37326552IPR002913START domain
SuperFamilySSF559612.2E-13589803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MLTIEEESVM TSDNRFASPP PPASSSPATI QNPNFNFIPF NSFSSIIPKE EHGMMSMSMM  60
MMMGDGAVEE MMENGSVGGS FGSVSEQAED PKSGTEFVVN ELRDDEQPPP AKKKRYHRHT  120
DRQIQEMEAL FKENPHPDDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR  180
ADNDNLKLEN SQLQAELRCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCIASRY  240
TDRPMPSMPP SQPLINPASE LPHHQPSLEL DISAYAGNYP DHPCSDLMSL PPQDTACFFP  300
TQTINNSNNN NMLLADEEKV MAMESAVSCV QELTKMCDTE EPLWVNKKSD KIGGETLCLN  360
EEEYMRLFPW PMEKNNNNGD FRTEASKANA VVIMNSITLV DAFLNADKWS EMFCSIVARA  420
KTVQIISSGV SGASGSLMLM YAELQVLSPL VPTREAYFLR YVEQNSENGN WAIVDFPIDS  480
FHDQNSPHEY KRKPSGCIIQ DMPNGYSKVK WVEHVEVVVE RHVHETFAEY VKSGMAFGAS  540
RWVDVLERQC ERMASLMARN ITDLGVIRSA EARRNMMRLS QRMIKTFCVN ISTSYGQSWT  600
ALSETTKDTV RITTRKVCEP GQPTGVVLVA VSTTWLPFSH FKVFDLLRDQ HHHSLLEVLF  660
SGNSPHEVAH IANGSHPGNC ISLLRINVAS NSWHNVELML QESCVDNSGG LIVYSSVDVV  720
PIQHVMNIED PSNVPLLPLG FSVVPVNPPG EVEGISVNSI PPPSCLLTVG IQVLASNVPT  780
AKPNLSTVTT INNHLCSIVD QITSVLSSTI SPTIASSAAA AKQDVI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607209.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_013607210.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_013607211.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A0D3E7100.0A0A0D3E710_BRAOL; Uncharacterized protein
STRINGBo9g066790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]