PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606735.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 289aa    MW: 31675.2 Da    PI: 7.323
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_013606735.1 142 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 186
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6432984IPR017884SANT domain
SMARTSM007173.0E-83082IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-103387IPR009057Homeodomain-like
CDDcd001679.32E-83379No hitNo description
PROSITE profilePS5129420.288135191IPR017930Myb domain
SuperFamilySSF466895.1E-17137191IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17138190IPR006447Myb domain, plants
SMARTSM007173.2E-13139189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12139185IPR009057Homeodomain-like
CDDcd001671.99E-11142187No hitNo description
PfamPF002495.0E-13142186IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEILRPTTSH VSGGNWLMEE TKSNVATARE SATWTAAENK AFENALAIYD DNTPDRWQKV  60
AAVIPGKTVS DIIRQYNELE ADVSNIEAGL IPVPGYITSP TFTLDWAGGG GGCNGLKPGH  120
PVGNKRSPAG RSPELDRKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA  180
SHAQKYFIRQ HSGGKDKRRA SIHDITTVNL EDEASLETNK NSLVGREHHS RLGGFPWSQT  240
DNTGTHADAF NITIGNALSG VNSYGQAMLG PFNTNADSCY DAQSTMFQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1634991176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606735.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606735.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-102DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3ECK40.0A0A0D3ECK4_BRAOL; Uncharacterized protein
STRINGBo9g135730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-179Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]