PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 39945.8 Da PI: 7.5944 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 252 | 290 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++ +eYIk L XP_013606267.1 252 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 290 5788999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.585 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-10 | 251 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.77E-6 | 251 | 294 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-9 | 255 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DHLLSPCFGQ READSDSGGS TVSIDSTLQM 60 MGLGFSSNSS SDWNQTVLQE DLNSSFRSSQ DHYHGQGFLS TTSSPYLLNP ACSSSSSPSP 120 PSSSLLQTFY DPEPSQYRFL STTSCSINNP QLSWASSKTS PHHQAAYGII NNFSNSTNSR 180 PFWSSSSTTN LNNTPHNSFV TTSQIIPTRL EDKTKNQKTK GQSESLKRAK DNDSASKKQR 240 ISTPSPLPTF KVRKENLRDQ ITSLQQLVSP FGKTDTASVL QESIEYIKFL HDQVTVLSTP 300 YMKQGASVQQ QHQKSGKSQD GNENLELRAH GLCLVPISST FPVANETTAD FWTPTFGGNS 360 FRYSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. | |||
GenBank | AY085602 | 0.0 | AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence. | |||
GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606267.1 | 0.0 | PREDICTED: transcription factor bHLH112-like isoform X1 | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A078JBZ2 | 0.0 | A0A078JBZ2_BRANA; BnaCnng38940D protein | ||||
STRING | Bo9g041010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8062 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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