PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 20547.6 Da PI: 9.075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13 | 0.00019 | 38 | 75 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R d+ ++++ L++++ + +K + a++L+ A +YI L XP_013605590.1 38 RKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75 66777799********999.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.137 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-9 | 37 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-6 | 44 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEFSRDAGMM MENKRSVCSL EESSIKRHKS DLSFSSKRKD KAGDRISALQ QIVSPYGKTD 60 TASVLQDALH YIEFLHEQVK VCPFLFISVQ YHYHLPTMIL SSSYLRKRHV LLVQVLSAPY 120 LQTMTAATQE ELEQYSLRNR GLCLVPMEYT AGVAQSNGAD IWAPVKTPPS PAFGVKSQSP 180 FR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189229 | 1e-112 | AC189229.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013C03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605590.1 | 1e-135 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Refseq | XP_013605591.1 | 1e-135 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Refseq | XP_013605592.1 | 1e-135 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Swissprot | Q7XJU2 | 2e-87 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A3P6BQN1 | 1e-123 | A0A3P6BQN1_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6F7S5 | 1e-126 | A0A3P6F7S5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g005780.1 | 1e-100 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.2 | 2e-97 | bHLH family protein |
Publications ? help Back to Top | |||
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