PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49040.7 Da PI: 6.1921 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.5e-12 | 263 | 305 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_013604461.1 263 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 305 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-16 | 259 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 262 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.27E-13 | 263 | 309 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 263 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.52E-6 | 373 | 433 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010444 | Biological Process | guard mother cell differentiation | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MNGDGTWLHD AGEQSQAGND NDESGSWVRN TEENWFNNPQ PLHHGSQTIL HNNNQNDFRF 60 SGGFPSNPSE NLLLLLQQST DTSSQLQHFT LDPTPQEQQQ QSFLATKACI TSLLNVPTSN 120 NNNPFDELGF SSGFFGQTHV NQTPNSMSFA GMSSPPENTA GVSNRFSPLE FTGVANGVFE 180 NRAKVLKPLD VLASSTSQPT LFQKRAAMRQ SSSSKTCNSE SSSEMRRSSY EPDIDDASTG 240 IIDIISDEHN KGKKKGMPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID 300 YLKELLQRIN DLHTELESTA PPSSSSLNPL TPTTQTLSYR VKEELCPSSS FPSPRGEQAR 360 IEVKLREGKA VNIHMFCGRR PGLLLSTMRA LDNLGLDVQQ AVVSCFNGFA LDVFRAEQCQ 420 EGHDVVPEQI KAVLLDTVGY TGLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 270 | KKKGMPAKNLMAERRRRKK |
2 | 264 | 271 | ERRRRKKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. Broad expression within stomatal cell lineages of leaf epidermis, except in mature guard-cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18641265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118011 | 0.0 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. | |||
GenBank | BT005377 | 0.0 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. | |||
GenBank | EU369670 | 0.0 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604461.1 | 0.0 | PREDICTED: transcription factor SCREAM2-like | ||||
Refseq | XP_013604462.1 | 0.0 | PREDICTED: transcription factor SCREAM2-like | ||||
Refseq | XP_013657322.1 | 0.0 | transcription factor SCREAM2-like | ||||
Refseq | XP_013657324.1 | 0.0 | transcription factor SCREAM2-like | ||||
Refseq | XP_013657326.1 | 0.0 | transcription factor SCREAM2-like | ||||
Swissprot | Q9LPW3 | 0.0 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | A0A078HA67 | 0.0 | A0A078HA67_BRANA; BnaC03g57010D protein | ||||
TrEMBL | A0A0D3DPE4 | 0.0 | A0A0D3DPE4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G8D9 | 0.0 | A0A3P6G8D9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g065080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1952 | 27 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 1e-177 | bHLH family protein |