PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603918.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 254aa    MW: 28618.7 Da    PI: 5.9004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.12e-4161353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     +GfrF+Ptd elv +yL++k +g       ++++vi++vdi++++Pw+Lp  ++++++++ wyfF +++++y++g+r++r+tksgyWk+tg++ +
  XP_013603918.1   6 VGFRFRPTDVELVEHYLRPKNNGGGsttsSQVDQVINTVDICNLDPWELPplSRIASSDQVWYFFGRKESRYNRGERQKRKTKSGYWKKTGNTLP 100
                     8*******************999887776777779**************9666999999************************************ PP

             NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++k  ++e++g k++L+fy     +g++++Wvmhey++
  XP_013603918.1 101 ITRKrgNHETIGEKRVLMFY----MSGSRSNWVMHEYHA 135
                     ***9777788**********....78999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.1024154IPR003441NAC domain
SuperFamilySSF1019413.14E-435154IPR003441NAC domain
PfamPF023654.6E-256134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGNNMVGFRF RPTDVELVEH YLRPKNNGGG STTSSQVDQV INTVDICNLD PWELPPLSRI  60
ASSDQVWYFF GRKESRYNRG ERQKRKTKSG YWKKTGNTLP ITRKRGNHET IGEKRVLMFY  120
MSGSRSNWVM HEYHASCLSP NDSGVYTICK VQFKGEASEI SSSSVVDHVV HSHSLPTPMN  180
NPGGSEGLEN SSSVLDNQQA MQFEAETQMA FDILPSYDWK SLLDDDDADE QNKTASMPSQ  240
RPVSSLVTYS SDDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-22713418139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603918.10.0PREDICTED: NAC domain-containing protein 4-like
SwissprotO819142e-72NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A0D3DZB00.0A0A0D3DZB0_BRAOL; Uncharacterized protein
STRINGBo8g117560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.12e-68NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]