PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 28403.3 Da PI: 7.0328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 76 | 127 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ e+ r+RR+++ s f +Lr +lP+ ++K s ++ +++Av+YIk+L+ XP_013603792.1 76 KAKRREIGRQRRQEVTSLFKNLRYILPSqY---IKGKRSSSDHVQEAVNYIKDLE 127 67778999********************66...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.42E-8 | 72 | 131 | No hit | No description |
SuperFamily | SSF47459 | 1.07E-11 | 72 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.284 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-9 | 75 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDFASSSLFT ADFAYENELD LSSLITPSTF IPFQEPNPSI PTIHCAGAEN DGRQRIRETT 60 TTDEITNEDV EPKNKKAKRR EIGRQRRQEV TSLFKNLRYI LPSQYIKGKR SSSDHVQEAV 120 NYIKDLEKKI KEISEKRDRI KRSISHSSST GECSIRSLES SYCSCDGYTH IDVKVRTCLV 180 GIEIVASCCF RQESCVSSIL QLLIQEQCLD VVSCISSRLH PRFIHTIVCE VDKGIEVNFL 240 ELQEKLIKM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603792.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603792.1 | 0.0 | PREDICTED: transcription factor bHLH55 | ||||
Swissprot | Q9LN95 | 1e-122 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | A0A0D3DXR1 | 0.0 | A0A0D3DXR1_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g108110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 1e-119 | bHLH family protein |
Publications ? help Back to Top | |||
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