PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603506.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 407aa    MW: 45497.2 Da    PI: 10.1153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-2348143299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     f +l+++++l ++ l lpk+fa+++ ++ke+ ++++l+d++ rsW + l ++k+s+++ +++GW++F+++ng k+g f+vFkl+g +++++++++
  XP_013603506.1  48 FVALVTASNLHKDALDLPKEFASSNLLEKEC-RKIVLRDRWERSWAMDLAFNKSSDTFNIRQGWRSFCDENGKKAGSFFVFKLIG-NRETPLLSL 140
                     56789999999**************888877.6***************************************************9.666689999 PP

                     E-S CS
              B3  97 frk 99 
                     +++
  XP_013603506.1 141 CST 143
                     886 PP
2B368.11.2e-21173264699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + + ++++g l+lp +f+++hg++k++   +tl  ++g +W  +l+ + ++gr+ l+kGWk+F+ +ngLk+gD+++F+l+g++++ ++++++r+
  XP_013603506.1 173 IEHASFRKGSLRLPLRFMKKHGLDKPR--LITLLGKDGTKWVANLRRESSGGRMRLGKGWKDFALDNGLKVGDSFTFELVGKNNTPPMLSLIRT 264
                     567789999***************655..8***************88888888****************************9999999998886 PP
3B353.25.2e-17304397499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     +ltp+dv   ++l+lp +f++++g+ k +  ++tl  ++g +W   +    k+g   l+ GWk+F++ang+k+g++++++ + + ++++ v+k++
  XP_013603506.1 304 TLTPEDVR-ACQLILPSQFMKANGIYKLG--KITLLGKNGTRWLAFYFLLSKDGLLALGCGWKDFCQANGVKTGESFTLECICEaNDATHVFKFC 395
                     45555555.578***********988655..8************99988888889*************************99998***99**999 PP

                     -S CS
              B3  98 rk 99 
                     ++
  XP_013603506.1 396 SN 397
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2339143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-2243144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.36747144IPR003340B3 DNA binding domain
CDDcd100171.80E-2047142No hitNo description
SMARTSM010196.8E-3048144IPR003340B3 DNA binding domain
PfamPF023624.0E-2148143IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-23166257IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-24168265IPR003340B3 DNA binding domain
PROSITE profilePS5086316.215168265IPR003340B3 DNA binding domain
CDDcd100176.02E-23170256No hitNo description
Gene3DG3DSA:2.40.330.101.4E-20170255IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-20171264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-18289398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-18298397IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-14300398IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294300397IPR003340B3 DNA binding domain
PfamPF023625.5E-16302397IPR003340B3 DNA binding domain
CDDcd100171.74E-14304395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLDLSDLEP VGCNNGQDET ELKRNKKAKK NNPEREVDSS ISSDHSCFVA LVTASNLHKD  60
ALDLPKEFAS SNLLEKECRK IVLRDRWERS WAMDLAFNKS SDTFNIRQGW RSFCDENGKK  120
AGSFFVFKLI GNRETPLLSL CSTESTSNKN NTESCVEHST TPPIKSRLMT LTIEHASFRK  180
GSLRLPLRFM KKHGLDKPRL ITLLGKDGTK WVANLRRESS GGRMRLGKGW KDFALDNGLK  240
VGDSFTFELV GKNNTPPMLS LIRTKSTSDT RQPSSGNKTR EGKKTIEERR DSSSAMKNQL  300
VTLTLTPEDV RACQLILPSQ FMKANGIYKL GKITLLGKNG TRWLAFYFLL SKDGLLALGC  360
GWKDFCQANG VKTGESFTLE CICEANDATH VFKFCSNSGV KTKKKVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603506.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12
SwissprotP0CAP41e-149REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A3N6SKJ40.0A0A3N6SKJ4_BRACR; Uncharacterized protein
STRINGBo8g099620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-152B3 family protein