PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28462.5 Da PI: 6.5286 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8e-10 | 112 | 158 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er RR+++ ++f L llP + +K +K+++L A+ +k+Lq XP_013603284.1 112 EHVIAERERREKLSEKFIALSALLPGL-----TKADKITVLDDAISRLKQLQ 158 699***********************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.941 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-15 | 111 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-15 | 112 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 112 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.82E-9 | 113 | 162 | No hit | No description |
SMART | SM00353 | 5.8E-12 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDEDFFLTDF SPEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK 60 INNKPRVIFF YFSSNVSSSP AREDIIMDQL ARRGTKRKSC SPAKRSPVFA KEHVIAERER 120 REKLSEKFIA LSALLPGLTK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV 180 KKSKVFFDEG TFLSSSSSSD HEQFGQPLPE IEAKVSQNEV LIRIHCEKSK GSMIDILNTI 240 ENFQLRV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 97 | RRGTKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603284.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603284.1 | 0.0 | PREDICTED: transcription factor bHLH19-like | ||||
Swissprot | Q1PF16 | 1e-117 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | A0A0D3DVY8 | 1e-179 | A0A0D3DVY8_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g100890.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-109 | bHLH family protein |
Publications ? help Back to Top | |||
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