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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013603204.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 346aa MW: 38911 Da PI: 8.2897 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013603204.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl
XP_013603204.1 14 KGLWSPEEDEKLLNHITHHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 47.6 | 4e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rg++++eE+ l+v+++ lG++ W+ Ia++++ gRt++++k+ w+
XP_013603204.1 67 RGAFSPEEENLIVELHSVLGNR-WSQIASRLP-GRTDNEIKNLWN 109
89********************.*********.*********998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001944 | Biological Process | vasculature development |
| GO:0009733 | Biological Process | response to auxin |
| GO:0010089 | Biological Process | xylem development |
| GO:0010119 | Biological Process | regulation of stomatal movement |
| GO:0010214 | Biological Process | seed coat development |
| GO:0048364 | Biological Process | root development |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MGRHSCCXKQ KLRKGLWSPE EDEKLLNHIT HHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAF SPEEENLIVE LHSVLGNRWS QIASRLPGRT DNEIKNLWNS SIKKKLKQRG 120
IDPNTHKPIS EVDKDKPTRS SNNDHKSPSS SAATNQDFFL ERPSDFSDYF GFQKLNFNSN 180
LTPESSLCSM VPGQFSLGNM VGSVFQTPVC VKPSISLPPD NSSSTVSRGD HTASNWEFQT 240
NNTSNFFENS GFSWSIPSSS VTKPNPNFEE VKWSEYLNTP FFNGSTVQSQ SSQQIYIKSE 300
GEYLAKVSNI TDPWSQSQNE NLSTPEASDV FSKDLQRMAV SFGQSL
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189331 | 0.0 | AC189331.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037O12, complete sequence. |
