PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603085.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 521aa    MW: 59876.9 Da    PI: 8.7341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-1418921094
                    HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ++++ l +p  f+ +h  k++++kt +l++  s  +W+vkl  ++++    +++GW+ F+ a++L++gD+vvF+++g+    lv+
  XP_013603085.1 18 GFTKH-LDIPAAFFLKHLDKSNKGKTAKLRSdASETTWNVKL--DGRR----FSDGWEYFAVAHDLRVGDIVVFRHEGE----LVF 92
                    55666.99*********667778999999997888*******..9998....9**********************7663....333 PP
2B362.75.7e-20147238296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     f +++++++l++++++lpk fa  + + k  + +++l++e+ +sW+++l+ + +s+r++++kGW++F+ ang k gD+++Fk+++ +e+++v+k+
  XP_013603085.1 147 FVITVTESNLRRDIVYLPKAFAVVNCLMK--KLEIVLMNEERESWKLYLTQESYSSRFYMSKGWRSFCVANGKKPGDMFTFKMVQ-NEATPVLKL 238
                     5677899***************9994443..348************************************************998.666688876 PP
3B3727.7e-23271361497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++++ +++ ++lpkkfa+++g+k  +++++ l++e+g+sW+++l+++ +sgr+++++GW++F+ ang k gD++ Fkl++ + +++v+k+f
  XP_013603085.1 271 AIVTASNIRRDTMYLPKKFAASNGLK--SKFKIDLMNEKGESWTIELRHEPYSGRFLIRSGWRSFCVANGKKPGDMFNFKLIR-NVETPVLKLF 361
                     56789999****************99..7789**************************************************9.5666788877 PP
4B347.62.9e-154365201399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++ l lp +f++ +g+k++e  ++++ d+ g +W+  l ++kk+++ + l+kG  +F++ ng+k g+++v++l++ +++ +v+k+++k
  XP_013603085.1 436 TSKLDLPLEFTKGNGIKNAE--KIKMIDRYGTTWSTSLLMDKKKRGaMKLGKGCIRFCEVNGVKMGESFVLELVW-EDTVPVLKFCSK 520
                     56699*********999666..8***************9955555559***************************.788899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-205102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-206106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.0828100IPR003340B3 DNA binding domain
CDDcd100171.49E-15995No hitNo description
SMARTSM010193.6E-2011100IPR003340B3 DNA binding domain
PfamPF023622.4E-92291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-19140237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20143239IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-24146242IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987146242IPR003340B3 DNA binding domain
CDDcd100173.47E-16146240No hitNo description
PfamPF023626.1E-18147238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21266359IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.819268364IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-21268360IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-20268362No hitNo description
SMARTSM010192.8E-30269364IPR003340B3 DNA binding domain
PfamPF023622.4E-21271361IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15424520IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.502424520IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-15424520IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-19429521IPR003340B3 DNA binding domain
CDDcd100172.67E-10433519No hitNo description
PfamPF023622.9E-13436520IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAFCSPTNPH FFQPLLPGFT KHLDIPAAFF LKHLDKSNKG KTAKLRSDAS ETTWNVKLDG  60
RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL VFYVTALGPS CCEIQYGEED SQEEDKSEEL  120
CDTMEKISRM KKRPKTEKKN SEDQSCFVIT VTESNLRRDI VYLPKAFAVV NCLMKKLEIV  180
LMNEERESWK LYLTQESYSS RFYMSKGWRS FCVANGKKPG DMFTFKMVQN EATPVLKLLP  240
LNNEDLHKLV DTEEVPKKKR QEIEADSSFV AIVTASNIRR DTMYLPKKFA ASNGLKSKFK  300
IDLMNEKGES WTIELRHEPY SGRFLIRSGW RSFCVANGKK PGDMFNFKLI RNVETPVLKL  360
FPLNLPKLEP SNDTRQGFEA TEKEFLGVQT NRDDSRQEPT NEAIRKGKWL EANETTIKEE  420
NITTSENRFV TLILTTSKLD LPLEFTKGNG IKNAEKIKMI DRYGTTWSTS LLMDKKKRGA  480
MKLGKGCIRF CEVNGVKMGE SFVLELVWED TVPVLKFCSK C
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603085.10.0PREDICTED: B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A0D3DVL00.0A0A0D3DVL0_BRAOL; Uncharacterized protein
STRINGBo8g099610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]