PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602811.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 399aa    MW: 43675 Da    PI: 6.8957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062773151154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  XP_013602811.1 277 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 315
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.782266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-6276319No hitNo description
SMARTSM003530.0071276321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-9280323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC  60
KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS  180
WANNNINPNH QASHGLINSF SANTNSLPFW NSSLTTNLNN TTQNSYVTTP LIIPPRGDDK  240
TKKTRGQSES LKRGKYNEPA SKKQRVTTPS PLPNFKVRKE NLRDQITSLQ QLVSPFGKTD  300
TASVLQEAIE YIKFLHDQVT VLSTPYMKQG APIHQQQQDG NDNQELRAHG LCLVPISSTF  360
PVANETTADF WTPTFGGNNF RKIKFASHDQ GLNHYLEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602811.10.0PREDICTED: transcription factor bHLH112-like isoform X1
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A0D3AAS50.0A0A0D3AAS5_BRAOL; Uncharacterized protein
STRINGBo1g098400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]