PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602776.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 30537.5 Da    PI: 6.3202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ lv +++++G  +W++ +++ g+ R++k+c++rw++yl
   XP_013602776.1 27 KGEWTAEEDQNLVAYINEHGVSDWRSLPKRAGLQRCGKSCRLRWLNYL 74
                     799*******************************************97 PP
2Myb_DNA-binding58.81.2e-1880124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e+++++++ lG++ W++Ia++m  +Rt++++k++w++ 
   XP_013602776.1  80 RGKFTPQEEEKIIKLHAVLGNR-WAAIAKEMD-NRTDNDIKNHWNSC 124
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.332274IPR017930Myb domain
SuperFamilySSF466899.18E-3024121IPR009057Homeodomain-like
SMARTSM007171.1E-132676IPR001005SANT/Myb domain
PfamPF002493.4E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-242881IPR009057Homeodomain-like
CDDcd001676.18E-102974No hitNo description
PROSITE profilePS5129427.18975129IPR017930Myb domain
SMARTSM007171.4E-1679127IPR001005SANT/Myb domain
PfamPF002495.3E-1780124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2582129IPR009057Homeodomain-like
CDDcd001671.74E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNVTVIGLVG LRKIGRKTWV DGDGMKKGEW TAEEDQNLVA YINEHGVSDW RSLPKRAGLQ  60
RCGKSCRLRW LNYLRPGIKR GKFTPQEEEK IIKLHAVLGN RWAAIAKEMD NRTDNDIKNH  120
WNSCLKKRLL RKGIDPMTHE PIINNLTVTI TNEECGSSSP TTSSHTSSPS GSACLLNKLA  180
TGISSRQHDL DKIKSILLEP RIASSDQDEK EELKRDHKIG GGEEEQDDFL IWDDEEVRRF  240
MESGEMEYET TPYVSLFYES THVLDDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26271297108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747531e-155KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602776.10.0PREDICTED: myb-related protein 308-like
RefseqXP_013602777.10.0PREDICTED: myb-related protein 308-like
RefseqXP_022551997.10.0myb-related protein 308-like
TrEMBLA0A0D3DTQ70.0A0A0D3DTQ7_BRAOL; Uncharacterized protein
STRINGBo8g091100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-114myb domain protein 47