PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602758.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 681aa    MW: 78142.6 Da    PI: 5.2262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.36.4e-1073026782373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ ++ gd+   + lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++k+f  +sP++++ +
  XP_013602758.1 302 RTLLILCAQSITLGDMITSHDLLRQIRNQSSPLGDASQRLAHFFANALEARLQGSSGGVIQSYyDAVSSKKRTATQILKSYKTFLSASPFMTLMY 396
                     689***************************************************8877777764777777778********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l  N++Il+a++ ++ +H+iDf+i +G+QWp ++q +++ ++gp +lRiTgv+ p++g   +e+le tg+rL+++++++gvpfe+n++++k++e+
  XP_013602758.1 397 LYSNKMILDAAKDASVLHVIDFGILYGFQWPMFIQRISESKNGPRKLRITGVELPQNGfrPTEKLEDTGRRLREYCKRFGVPFEYNAIASKNWET 491
                     *********************************************************9******************************99***** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++lee++++p+E+laVn vl+ ++l d +   e+ +r+ +Lkl+++++P+v+v +  + + n++ F +rf eal +y+a+fd++ ++l+re+ er
  XP_013602758.1 492 IRLEEFKIRPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVFVNSTVNGSFNASFFTTRFKEALFHYTAVFDMFGSTLSRENPER 586
                     **************************9999999889*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  E+++ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  XP_013602758.1 587 MHFEEVFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVEAELVESFRVKMKKWGyHKDFVLDEDSNWFLQGWKGRILYSSSCW 678
                     ************************************************************9999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.408275658IPR005202Transcription factor GRAS
PfamPF035142.2E-104302678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MESNFSGMVN GYEYYYDVSY LPNQTPNLGF GVPSSNDFDL RLDRVQPSIW VPSTQQDQDQ  60
DQDQDSPPPG ADEMDSENTL LKYVNQLLME EETLAESQSM SYDSLALRQT EEMLQQVITD  120
SQTQSPYITP PYSINSSSSS SSSSGGGEYL NSNSDSCVRF KTRTNSAEVL SFQGPNMLRR  180
FGQPANESMF GDANSVMQFR RGLEEASKFL PNTDQWIFNQ ERERNEKGYM SRVRKHHHQL  240
DEDDDEARRS KQSAANVDDG KLTEMFDKVL LLDNQLDPQI NDNVSSKAPA SNKERDQSVD  300
FRTLLILCAQ SITLGDMITS HDLLRQIRNQ SSPLGDASQR LAHFFANALE ARLQGSSGGV  360
IQSYYDAVSS KKRTATQILK SYKTFLSASP FMTLMYLYSN KMILDAAKDA SVLHVIDFGI  420
LYGFQWPMFI QRISESKNGP RKLRITGVEL PQNGFRPTEK LEDTGRRLRE YCKRFGVPFE  480
YNAIASKNWE TIRLEEFKIR PNEVLAVNAV LRFKNLRDVT PGEEDCPREG FLKLIRDMKP  540
DVFVNSTVNG SFNASFFTTR FKEALFHYTA VFDMFGSTLS RENPERMHFE EVFYGREVMN  600
VIACEGVDRV ERPETYKQWQ VRMMRAGFKQ KPVEAELVES FRVKMKKWGY HKDFVLDEDS  660
NWFLQGWKGR ILYSSSCWVP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-463056788374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602757.10.0PREDICTED: scarecrow-like protein 31
RefseqXP_013602758.10.0PREDICTED: scarecrow-like protein 31
RefseqXP_013602759.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A0D3DYK50.0A0A0D3DYK5_BRAOL; Uncharacterized protein
STRINGBo8g114020.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein