PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602606.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 267aa    MW: 30318.2 Da    PI: 5.8898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ lv +++++G  +W++ +++ g+ R++k+c++rw++yl
   XP_013602606.1 27 KGEWTAEEDQNLVAYINEHGVSDWRSLPKRAGLQRCGKSCRLRWLNYL 74
                     799*******************************************97 PP
2Myb_DNA-binding56.94.9e-1880124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e ++++++ lG++ W++Ia++m  +Rt++++k++w++ 
   XP_013602606.1  80 RGKFTPQEEEEIIKLHAVLGNR-WAAIAKEMD-NRTDNDIKNHWNSC 124
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.332274IPR017930Myb domain
SuperFamilySSF466891.64E-2924121IPR009057Homeodomain-like
SMARTSM007171.1E-132676IPR001005SANT/Myb domain
PfamPF002493.4E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-242881IPR009057Homeodomain-like
CDDcd001671.04E-102974No hitNo description
PROSITE profilePS5129426.71975129IPR017930Myb domain
SMARTSM007173.8E-1679127IPR001005SANT/Myb domain
PfamPF002491.9E-1680124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2582129IPR009057Homeodomain-like
CDDcd001675.87E-1182122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNVAVIGLVG LRKMGRKTWV DGDGMKKGEW TAEEDQNLVA YINEHGVSDW RSLPKRAGLQ  60
RCGKSCRLRW LNYLRPGIKR GKFTPQEEEE IIKLHAVLGN RWAAIAKEMD NRTDNDIKNH  120
WNSCLKKRLS RKGIDPMTHE PIINNLTVTI TNEECGSSSI TTFSPTSSPS GSACLLNKLA  180
TGISSRHHDL DRIKSILLEP RIASSDQDEK EEVKRDHTIG GGEEGDDFLI WDDEEVRRFM  240
ESDEMEYGTT PYVSLFYEST HVLDDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26271297108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747531e-159KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602606.10.0PREDICTED: transcription factor MYB34-like isoform X1
TrEMBLA0A397Y3R60.0A0A397Y3R6_BRACM; Uncharacterized protein
STRINGBo8g104210.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-118myb domain protein 47