PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013601979.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 658aa MW: 72051.7 Da PI: 5.5571

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013601979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.7e-16	371	409	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013601979.1 371 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 409 689**********************************96 PP
2	TCR	52.6	9.2e-17	456	494	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN XP_013601979.1 456 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 494 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	370	411	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.245	371	496	IPR005172	CRC domain
Pfam	PF03638	6.3E-12	373	408	IPR005172	CRC domain
SMART	SM01114	2.1E-17	456	497	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.9E-12	458	494	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MDTPQKSITQ IETPVSKSRV EDSPVFNYIN SLSPIRPVKS IPNPHQFSAL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHHPS PDPTIPVQES PDDSTSNEGA AAEAEVTPNF NIDASTEMEQ 120 PHIAKETNLD DLPLAVSPCG RETTGDLSLV PYASPPREEN GEDDTGMEMY GNVQGKNETP 180 DWDRLIADSS EFLIFSSPND SEAFRCLMMQ RASPSQAPSV MMPTMQPGSI NEPESSIASP 240 YGAVSVLHRG IRRRCLDFEM PGNKQTSSEN NTSACGSSSR CVVPSIGLHL NALLMSTKDC 300 KTNNTTHDYS CSEKYQVGLQ GSSSTLQETL DQTETETRDL EDVPVEPTLE ELHLSSPKKK 360 RVKLEAGEGE SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCIDCFNKPI HEDTVLATRK 420 QIESRNPLAF APKVIKSSDL VLETGDDASK TPASARHKRG CNCKKSNCLK KYCECFQGGV 480 GCSINCRCEG CKNAFGRKDG SAIVDMEAEQ EEENETSGKN RRAKTQENSE VYLMRKEESS 540 ALPATPMSVY RQQLVQLKNM MPPPQSVLGV GSSSSGMFNS QYTRKLEMKS LETVAEDGAE 600 EMPEILSHSS IDNVNAVSPN GKRVSPPHLD SSSSGRRSGG RKLILQSIPT FPSLTPQH

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MDTPQKSITQ IETPVSKSRV EDSPVFNYIN SLSPIRPVKS IPNPHQFSAL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHHPS PDPTIPVQES PDDSTSNEGA AAEAEVTPNF NIDASTEMEQ  120
PHIAKETNLD DLPLAVSPCG RETTGDLSLV PYASPPREEN GEDDTGMEMY GNVQGKNETP  180
DWDRLIADSS EFLIFSSPND SEAFRCLMMQ RASPSQAPSV MMPTMQPGSI NEPESSIASP  240
YGAVSVLHRG IRRRCLDFEM PGNKQTSSEN NTSACGSSSR CVVPSIGLHL NALLMSTKDC  300
KTNNTTHDYS CSEKYQVGLQ GSSSTLQETL DQTETETRDL EDVPVEPTLE ELHLSSPKKK  360
RVKLEAGEGE SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCIDCFNKPI HEDTVLATRK  420
QIESRNPLAF APKVIKSSDL VLETGDDASK TPASARHKRG CNCKKSNCLK KYCECFQGGV  480
GCSINCRCEG CKNAFGRKDG SAIVDMEAEQ EEENETSGKN RRAKTQENSE VYLMRKEESS  540
ALPATPMSVY RQQLVQLKNM MPPPQSVLGV GSSSSGMFNS QYTRKLEMKS LETVAEDGAE  600
EMPEILSHSS IDNVNAVSPN GKRVSPPHLD SSSSGRRSGG RKLILQSIPT FPSLTPQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	375	493	14	120	Protein lin-54 homolog
5fd3_B	1e-16	375	493	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	363	PKKKRVKL
2	356	364	PKKKRVKLE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013601979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	7e-92	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	7e-92	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	7e-92	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601979.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Refseq	XP_013668469.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D3A850	0.0	A0A0D3A850_BRAOL; Uncharacterized protein
STRING	Bo1g057470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]