PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 723aa MW: 80517.4 Da PI: 8.2723 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.3 | 6e-18 | 339 | 438 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+l+ sd+++ gr+vlpkk+ae++ +++++ ++ lt+ d++g++W++++++ +++s++y+l+ G ++ +L++gD+v+F++ + e++ XP_013601765.1 339 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwvNNNSRMYFLE-GITPCIQSMQLQAGDTVIFSRAD-PEKK 431 89**************************88899999****************99888888889888.********************654.5555 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_013601765.1 432 LIMGFRK 438 6666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-27 | 335 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-19 | 336 | 438 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.51E-20 | 337 | 438 | No hit | No description |
PROSITE profile | PS50863 | 11.237 | 339 | 440 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-15 | 339 | 440 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-15 | 339 | 438 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CASAYEQGRF 60 CDIFHQRASG WRCCESCGKR IHCGCIVSAP AFMLLDAGGI ECLTCARKKV SVGPNFRPPP 120 PSFLFQSPIS EKFQDLSIDW NSSTRSYRPP NLSGPSIRQS DRGDCYEFNQ PTSKDKATAY 180 STEKHRGMND LMGKLMSVNS NNHTNSILYN QKAGPNCKVP TCPNVNAAYP PLISLKEGPL 240 VGAQRAFPVT TPVETNGHLG LGGRYLWHKA NSSPLSHLHN DLNNGADSPL ESKNWNFGIH 300 LDTPGKYQVV PRYSPKVPYK NQVLQNLPNE SVSVVTPLFE KILSVSDAGR VGRMVLPKKC 360 AEAFLPQISQ TDGVPLTVHD STGKEWTFQF RFWVNNNSRM YFLEGITPCI QSMQLQAGDT 420 VIFSRADPEK KLIMGFRKAS VAQSSVQETE LNNNRESCTN GDAEPIDIHP PNGKKKSSMT 480 TTRSKRQKVE KGELSELKLT WEEAQGFILP SPNLTPSIIT IEGIEFEEYE DAPIIGKPNT 540 GFGSTCSANK GLLAEQDDEE AKDEAEGLLM SPKSTSKHPR HRNGCTCIVC LQSPSGSSPK 600 HGRRCSCTVC DTVRRRRETL LQRKKKQQQS EIENKAHKGM ESPNSEEERH QSVNNSGTTS 660 KDYERHASPP SKAQIDLNFQ PEKDEESPLP RSKTTTKDKS LHHDEARSSS SAHNKLHVDF 720 ADS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-50 | 314 | 442 | 1 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 613 | 624 | RRRRETLLQRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in plant development. {ECO:0000269|PubMed:17158584}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601765.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VAL3 | ||||
Swissprot | O65420 | 0.0 | VAL3_ARATH; B3 domain-containing transcription factor VAL3 | ||||
TrEMBL | A0A0D3A4V6 | 0.0 | A0A0D3A4V6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FXI8 | 0.0 | A0A3P6FXI8_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g024250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 0.0 | VP1/ABI3-like 3 |