PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013601523.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 441aa MW: 49666.1 Da PI: 5.4646

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013601523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.2	5.8e-08	296	327	23	54
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 r p+++e+ LAk+++L+++qV +WF N R + XP_013601523.1 296 RSPKESEKMMLAKQTRLSKNQVANWFINARVR 327 789***************************88 PP
2	BELL	112.9	1.7e-36	196	267	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kkakLl++++eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS hF +L+dai+++i XP_013601523.1 196 ERQELQSKKAKLLTMVDEVDKRYNQYYHQMEALASSFEVVAGFGSAKPYTSVALNRISCHFCSLRDAIKKHI 267 79*******************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-46	131	265	IPR006563	POX domain
Pfam	PF07526	5.1E-45	136	263	IPR006563	POX domain
SMART	SM00389	0.0042	290	335	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-10	297	338	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.847	298	331	IPR001356	Homeobox domain
Pfam	PF05920	2.7E-10	298	327	IPR008422	Homeobox KN domain
CDD	cd00086	1.45E-6	298	332	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-15	298	337	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MCLQEPIYLN HHHHQQQQQP SSSSSAAASF IGGEEIVRNE MVFSPPTGLQ NLNGDVPVSS 60 SELTFRDGQG LSLSLLGTQF SLPSFHYQQY QSGFTTNPPI SVQETPLFSK EMLLLGQSDP 120 SSGYGGVYNS YNMSSVLRSR YLKPAQGLLD EVVSVEKELN QMRRKKKGET FNNSANETEG 180 GGGFGGEISI ELSTIERQEL QSKKAKLLTM VDEVDKRYNQ YYHQMEALAS SFEVVAGFGS 240 AKPYTSVALN RISCHFCSLR DAIKKHIQVI REKLKEKGGE LSLDEQQGGE RIPRLRSPKE 300 SEKMMLAKQT RLSKNQVANW FINARVRLWK PMIEEMYKEE FGDDASELLT SKSPNSTNQE 360 DSSQQQQPEN TTNVAFSSEP KPDCTSANED DPQLHQMNRS ADYDSLVNYH GFDVDDYRYI 420 DGNNQQESRF SNGHHLHDFV V

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MCLQEPIYLN HHHHQQQQQP SSSSSAAASF IGGEEIVRNE MVFSPPTGLQ NLNGDVPVSS  60
SELTFRDGQG LSLSLLGTQF SLPSFHYQQY QSGFTTNPPI SVQETPLFSK EMLLLGQSDP  120
SSGYGGVYNS YNMSSVLRSR YLKPAQGLLD EVVSVEKELN QMRRKKKGET FNNSANETEG  180
GGGFGGEISI ELSTIERQEL QSKKAKLLTM VDEVDKRYNQ YYHQMEALAS SFEVVAGFGS  240
AKPYTSVALN RISCHFCSLR DAIKKHIQVI REKLKEKGGE LSLDEQQGGE RIPRLRSPKE  300
SEKMMLAKQT RLSKNQVANW FINARVRLWK PMIEEMYKEE FGDDASELLT SKSPNSTNQE  360
DSSQQQQPEN TTNVAFSSEP KPDCTSANED DPQLHQMNRS ADYDSLVNYH GFDVDDYRYI  420
DGNNQQESRF SNGHHLHDFV V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013601523.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY570508	2e-97	AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601523.1	0.0	PREDICTED: BEL1-like homeodomain protein 10
Swissprot	Q9FXG8	0.0	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	A0A0D3DQF9	0.0	A0A0D3DQF9_BRAOL; Uncharacterized protein
STRING	Bo8g069720.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19700.3	1e-171	BEL1-like homeodomain 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]