PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013600769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 35786.1 Da PI: 6.7993 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 3.9e-11 | 155 | 200 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq XP_013600769.1 155 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 200 99***********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 148 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.71E-13 | 148 | 204 | No hit | No description |
PROSITE profile | PS50888 | 16.984 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 152 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 155 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPPP SSDGFVDSRH 60 QQIMMMPLPS HHQNEVVDGS SVHSLYNGFS AGGSLPFHIP QGTAGGMMNQ QGQALTQKQT 120 QPQVSASIAT GGTAAAPPQS RTKVRARRGQ ATDPHSIAER LRRERIAERM KGLQELVPNG 180 NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGGASNSQI SEENTSSAVA GGNQATGNSN 240 DSLTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN TLIPGAAGGV 300 GGHPSSPNLS GMSVQSTNKV KLSGNGVTEG SPPLVVKEAV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 159 | 164 | RLRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013600769.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK176370 | 1e-131 | AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21. | |||
GenBank | AK176390 | 1e-131 | AK176390.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-10-C06. | |||
GenBank | BT026512 | 1e-131 | BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600769.1 | 0.0 | PREDICTED: transcription factor bHLH66-like | ||||
Swissprot | Q9ZUG9 | 1e-164 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A0D3DVP0 | 0.0 | A0A0D3DVP0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G063 | 0.0 | A0A3P6G063_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g099910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-133 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|